miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 130979 0.66 0.811106
Target:  5'- uGGGGGCagUGagcacggUACCCAGCCUgacgcGGGcGGc -3'
miRNA:   3'- -CCCCCGagAU-------GUGGGUCGGG-----UCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 127745 0.67 0.751483
Target:  5'- cGGcGGCcgUCUGCGCCUcguAGCCCggaAGGUGc -3'
miRNA:   3'- cCC-CCG--AGAUGUGGG---UCGGG---UCCACc -5'
14464 3' -60.6 NC_003521.1 + 121794 0.72 0.479926
Target:  5'- aGGuGGCgguacUUGCGCUCGGCCguGGUGGg -3'
miRNA:   3'- cCC-CCGa----GAUGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 120943 0.72 0.507768
Target:  5'- cGGGGCgacgaggagaaccgaCUGCggACCgaGGCCCGGGUGGa -3'
miRNA:   3'- cCCCCGa--------------GAUG--UGGg-UCGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 120236 0.69 0.677032
Target:  5'- --uGGCagUGCAUCCGGCCgaAGGUGGa -3'
miRNA:   3'- cccCCGagAUGUGGGUCGGg-UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 115826 0.67 0.786739
Target:  5'- cGGGuGGCUCaGCagGCgCUGGCUCAGGcGGg -3'
miRNA:   3'- -CCC-CCGAGaUG--UG-GGUCGGGUCCaCC- -5'
14464 3' -60.6 NC_003521.1 + 115642 0.66 0.820045
Target:  5'- aGGGGCUCgugcgugucgGCGcCCCAGUggCGGGUGa -3'
miRNA:   3'- cCCCCGAGa---------UGU-GGGUCGg-GUCCACc -5'
14464 3' -60.6 NC_003521.1 + 112620 1.12 0.001222
Target:  5'- aGGGGGCUCUACACCCAGCCCAGGUGGa -3'
miRNA:   3'- -CCCCCGAGAUGUGGGUCGGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 110009 0.7 0.600474
Target:  5'- aGGcGGGagaUgUGCACCCGGCUCucGUGGg -3'
miRNA:   3'- -CC-CCCg--AgAUGUGGGUCGGGucCACC- -5'
14464 3' -60.6 NC_003521.1 + 107797 0.67 0.769326
Target:  5'- uGGGGGCUgCUgAUACUguGCC--GGUGGc -3'
miRNA:   3'- -CCCCCGA-GA-UGUGGguCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 105628 0.68 0.695986
Target:  5'- aGGGcGuGCUCggGCgugugcgugaaGCCCAGCUCggGGGUGGg -3'
miRNA:   3'- -CCC-C-CGAGa-UG-----------UGGGUCGGG--UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 102973 0.74 0.411825
Target:  5'- cGGGGCUCUggcgggGCgGCCCAGCCgCGGcGUGa -3'
miRNA:   3'- cCCCCGAGA------UG-UGGGUCGG-GUC-CACc -5'
14464 3' -60.6 NC_003521.1 + 95197 0.67 0.769326
Target:  5'- cGGaaCUCcACGCCCGGCaCCGGGUGc -3'
miRNA:   3'- cCCccGAGaUGUGGGUCG-GGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 91444 0.71 0.547457
Target:  5'- uGGGGGCUUUcuaugcgcgcauacGCGCgCAGCUCgcggguguaugcguGGGUGGg -3'
miRNA:   3'- -CCCCCGAGA--------------UGUGgGUCGGG--------------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 84890 0.67 0.77809
Target:  5'- cGGGuGGCgcgaguaggccgUCaGCGCCCGGUCCAGcaGGg -3'
miRNA:   3'- -CCC-CCG------------AGaUGUGGGUCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 78474 0.71 0.547457
Target:  5'- gGGGGGCUgcGCGCCCAcGCCCgcagucgccgccugcGGGUa- -3'
miRNA:   3'- -CCCCCGAgaUGUGGGU-CGGG---------------UCCAcc -5'
14464 3' -60.6 NC_003521.1 + 76533 0.67 0.760454
Target:  5'- -aGGGC-CUGCGCCguCAGCCCGcGGUaguGGa -3'
miRNA:   3'- ccCCCGaGAUGUGG--GUCGGGU-CCA---CC- -5'
14464 3' -60.6 NC_003521.1 + 54337 0.69 0.638791
Target:  5'- cGGGGCUCU-CGCCCugGGCCacucggGGcGUGGc -3'
miRNA:   3'- cCCCCGAGAuGUGGG--UCGGg-----UC-CACC- -5'
14464 3' -60.6 NC_003521.1 + 47832 0.67 0.795266
Target:  5'- cGGGGUUUUGCAgUCCAGgaCGGGUGa -3'
miRNA:   3'- cCCCCGAGAUGU-GGGUCggGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 44366 0.69 0.667502
Target:  5'- uGGGGCUgCggcccACGCCCgaGGCCgAGGUGc -3'
miRNA:   3'- cCCCCGA-Ga----UGUGGG--UCGGgUCCACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.