miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 3' -60.6 NC_003521.1 + 238814 0.66 0.811926
Target:  5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3'
miRNA:   3'- cCCCCGagaUGUGGguCGGG--UCCACc -5'
14464 3' -60.6 NC_003521.1 + 238568 0.66 0.811106
Target:  5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3'
miRNA:   3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5'
14464 3' -60.6 NC_003521.1 + 238475 0.66 0.803665
Target:  5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3'
miRNA:   3'- cCCCCGagaUgUGgGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 227217 0.7 0.60621
Target:  5'- -aGGGCUacgaagagcccgGCACCCaccAGaCCCAGGUGGa -3'
miRNA:   3'- ccCCCGAga----------UGUGGG---UC-GGGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 218774 0.7 0.581414
Target:  5'- uGGGGUgUCUGCGUCCGGCUCugacuucuGGGUGGg -3'
miRNA:   3'- cCCCCG-AGAUGUGGGUCGGG--------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 206614 0.7 0.610038
Target:  5'- cGGGcGCcgUCUACGCC--GCCCuGGUGGg -3'
miRNA:   3'- cCCC-CG--AGAUGUGGguCGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 202337 0.67 0.755083
Target:  5'- cGGGGCUCgaguaagaacgccgGCGCCCaccgccagAGCCCAGacGGu -3'
miRNA:   3'- cCCCCGAGa-------------UGUGGG--------UCGGGUCcaCC- -5'
14464 3' -60.6 NC_003521.1 + 200384 0.7 0.627285
Target:  5'- -cGGGCUagagcgcgcgaGCACCUGGCCguGGUGGa -3'
miRNA:   3'- ccCCCGAga---------UGUGGGUCGGguCCACC- -5'
14464 3' -60.6 NC_003521.1 + 191246 0.68 0.732353
Target:  5'- aGGaGGCg--GCGCCgCGGCCCacgcggcAGGUGGu -3'
miRNA:   3'- cCC-CCGagaUGUGG-GUCGGG-------UCCACC- -5'
14464 3' -60.6 NC_003521.1 + 184781 0.66 0.811926
Target:  5'- uGGGGCaacgcGCGCCUggacGCCCuGGUGGc -3'
miRNA:   3'- cCCCCGaga--UGUGGGu---CGGGuCCACC- -5'
14464 3' -60.6 NC_003521.1 + 177281 0.74 0.38787
Target:  5'- aGGGcGGCUCcgugACGCUgGGCCCAGGg-- -3'
miRNA:   3'- -CCC-CCGAGa---UGUGGgUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 175390 0.68 0.694098
Target:  5'- cGGGGacccaugACCCGGCgCAGGUGGg -3'
miRNA:   3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 168164 0.68 0.724047
Target:  5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3'
miRNA:   3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5'
14464 3' -60.6 NC_003521.1 + 165451 0.66 0.811926
Target:  5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3'
miRNA:   3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5'
14464 3' -60.6 NC_003521.1 + 157063 0.67 0.786739
Target:  5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3'
miRNA:   3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 150263 0.69 0.677032
Target:  5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3'
miRNA:   3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 149031 0.66 0.811926
Target:  5'- uGGGGGU-----GCCCAaccgccGCCCGGGUGu -3'
miRNA:   3'- -CCCCCGagaugUGGGU------CGGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 144893 0.67 0.751483
Target:  5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3'
miRNA:   3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5'
14464 3' -60.6 NC_003521.1 + 138789 0.66 0.828013
Target:  5'- --cGGCcgugCUGCGCgCCguGGCCCAGGUGc -3'
miRNA:   3'- cccCCGa---GAUGUG-GG--UCGGGUCCACc -5'
14464 3' -60.6 NC_003521.1 + 135160 0.77 0.2825
Target:  5'- uGGuGGuGUUCUGCGCCaggaAGCCCAGGaUGGu -3'
miRNA:   3'- -CC-CC-CGAGAUGUGGg---UCGGGUCC-ACC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.