Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14464 | 3' | -60.6 | NC_003521.1 | + | 238814 | 0.66 | 0.811926 |
Target: 5'- uGGGGCgcgACGCCguGUCCcuGGGUGu -3' miRNA: 3'- cCCCCGagaUGUGGguCGGG--UCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 238568 | 0.66 | 0.811106 |
Target: 5'- uGGGGGCagUagccgaagacgGCACCCAGCUcguccagcacuagCAGGgccUGGg -3' miRNA: 3'- -CCCCCGagA-----------UGUGGGUCGG-------------GUCC---ACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 238475 | 0.66 | 0.803665 |
Target: 5'- cGGGGCgg-AgACgCGGCCCAGGg-- -3' miRNA: 3'- cCCCCGagaUgUGgGUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 227217 | 0.7 | 0.60621 |
Target: 5'- -aGGGCUacgaagagcccgGCACCCaccAGaCCCAGGUGGa -3' miRNA: 3'- ccCCCGAga----------UGUGGG---UC-GGGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 218774 | 0.7 | 0.581414 |
Target: 5'- uGGGGUgUCUGCGUCCGGCUCugacuucuGGGUGGg -3' miRNA: 3'- cCCCCG-AGAUGUGGGUCGGG--------UCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 206614 | 0.7 | 0.610038 |
Target: 5'- cGGGcGCcgUCUACGCC--GCCCuGGUGGg -3' miRNA: 3'- cCCC-CG--AGAUGUGGguCGGGuCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 202337 | 0.67 | 0.755083 |
Target: 5'- cGGGGCUCgaguaagaacgccgGCGCCCaccgccagAGCCCAGacGGu -3' miRNA: 3'- cCCCCGAGa-------------UGUGGG--------UCGGGUCcaCC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 200384 | 0.7 | 0.627285 |
Target: 5'- -cGGGCUagagcgcgcgaGCACCUGGCCguGGUGGa -3' miRNA: 3'- ccCCCGAga---------UGUGGGUCGGguCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 191246 | 0.68 | 0.732353 |
Target: 5'- aGGaGGCg--GCGCCgCGGCCCacgcggcAGGUGGu -3' miRNA: 3'- cCC-CCGagaUGUGG-GUCGGG-------UCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 184781 | 0.66 | 0.811926 |
Target: 5'- uGGGGCaacgcGCGCCUggacGCCCuGGUGGc -3' miRNA: 3'- cCCCCGaga--UGUGGGu---CGGGuCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 177281 | 0.74 | 0.38787 |
Target: 5'- aGGGcGGCUCcgugACGCUgGGCCCAGGg-- -3' miRNA: 3'- -CCC-CCGAGa---UGUGGgUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 175390 | 0.68 | 0.694098 |
Target: 5'- cGGGGacccaugACCCGGCgCAGGUGGg -3' miRNA: 3'- cCCCCgagaug-UGGGUCGgGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 168164 | 0.68 | 0.724047 |
Target: 5'- aGGGGCgc--CGCCCAgGCCCAucGUGGa -3' miRNA: 3'- cCCCCGagauGUGGGU-CGGGUc-CACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 165451 | 0.66 | 0.811926 |
Target: 5'- aGGGGUg--GCagGCCUugAGCaCCAGGUGGc -3' miRNA: 3'- cCCCCGagaUG--UGGG--UCG-GGUCCACC- -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 157063 | 0.67 | 0.786739 |
Target: 5'- gGGGGGCgccgcCACCCuGuCCCAGGc-- -3' miRNA: 3'- -CCCCCGagau-GUGGGuC-GGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 150263 | 0.69 | 0.677032 |
Target: 5'- aGGGGGCg--GUACCCAcuccuCCCAGGUGu -3' miRNA: 3'- -CCCCCGagaUGUGGGUc----GGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 149031 | 0.66 | 0.811926 |
Target: 5'- uGGGGGU-----GCCCAaccgccGCCCGGGUGu -3' miRNA: 3'- -CCCCCGagaugUGGGU------CGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 144893 | 0.67 | 0.751483 |
Target: 5'- -aGGGCUCUG-AUCCGGCUCGGGa-- -3' miRNA: 3'- ccCCCGAGAUgUGGGUCGGGUCCacc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 138789 | 0.66 | 0.828013 |
Target: 5'- --cGGCcgugCUGCGCgCCguGGCCCAGGUGc -3' miRNA: 3'- cccCCGa---GAUGUG-GG--UCGGGUCCACc -5' |
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14464 | 3' | -60.6 | NC_003521.1 | + | 135160 | 0.77 | 0.2825 |
Target: 5'- uGGuGGuGUUCUGCGCCaggaAGCCCAGGaUGGu -3' miRNA: 3'- -CC-CC-CGAGAUGUGGg---UCGGGUCC-ACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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