Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14464 | 5' | -56.3 | NC_003521.1 | + | 113324 | 0.66 | 0.936181 |
Target: 5'- gACCugCUGGgCCAaGAcgccGGGGGGCUUc -3' miRNA: 3'- aUGGugGACCgGGU-CUa---CCUCUUGAA- -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 117195 | 0.66 | 0.936181 |
Target: 5'- cUGCCGCC--GCCCGaggcGGUGGAGAugUc -3' miRNA: 3'- -AUGGUGGacCGGGU----CUACCUCUugAa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 128201 | 0.66 | 0.936181 |
Target: 5'- -uCCACCUGGgCUGGGUGuAGAGCc- -3' miRNA: 3'- auGGUGGACCgGGUCUACcUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 139237 | 0.66 | 0.935694 |
Target: 5'- cUACCACCUGuacggggcuccucGCgCGGAgcgGGGGGACg- -3' miRNA: 3'- -AUGGUGGAC-------------CGgGUCUa--CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 48947 | 0.66 | 0.93121 |
Target: 5'- cGCCGCC--GCCCAGuUGGAcGGACa- -3' miRNA: 3'- aUGGUGGacCGGGUCuACCU-CUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 87349 | 0.66 | 0.926535 |
Target: 5'- gGCCcgaGCCggagcccgaggaggaGGCCgAGGUGGAGGACg- -3' miRNA: 3'- aUGG---UGGa--------------CCGGgUCUACCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 83374 | 0.66 | 0.926004 |
Target: 5'- gAUCugCUGGCCCAacaGAgGGAGgGACUc -3' miRNA: 3'- aUGGugGACCGGGU---CUaCCUC-UUGAa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 120736 | 0.66 | 0.920561 |
Target: 5'- gGCCACCaggGGCaCCAGGUGGccgccuGGAUg- -3' miRNA: 3'- aUGGUGGa--CCG-GGUCUACCu-----CUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 109787 | 0.66 | 0.920561 |
Target: 5'- cGCCGCCgccGCCCAGGagacgggacgUGGAGGAg-- -3' miRNA: 3'- aUGGUGGac-CGGGUCU----------ACCUCUUgaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 127081 | 0.66 | 0.914883 |
Target: 5'- gGCCACCgacgagaggcGGCCCAGcccguguucguaGUGGaAGAGCa- -3' miRNA: 3'- aUGGUGGa---------CCGGGUC------------UACC-UCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 157180 | 0.66 | 0.908971 |
Target: 5'- gUGCCgcACCUGcaagagagaaGCCCGGGUGG-GAGCg- -3' miRNA: 3'- -AUGG--UGGAC----------CGGGUCUACCuCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 84878 | 0.66 | 0.908971 |
Target: 5'- gGCCGCCcGGUCCGGGUGGcgcGAGu-- -3' miRNA: 3'- aUGGUGGaCCGGGUCUACCu--CUUgaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 111860 | 0.66 | 0.908971 |
Target: 5'- cGCCGCCguacuucgUGGUgCAGAcgcuggUGGAGAACg- -3' miRNA: 3'- aUGGUGG--------ACCGgGUCU------ACCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 46678 | 0.66 | 0.908971 |
Target: 5'- aACCGCCc-GCCgAGGUGGAGAuGCg- -3' miRNA: 3'- aUGGUGGacCGGgUCUACCUCU-UGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 168115 | 0.67 | 0.902826 |
Target: 5'- cACgCGCCcggGGUCCuGGUGGaAGAACUUg -3' miRNA: 3'- aUG-GUGGa--CCGGGuCUACC-UCUUGAA- -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 36772 | 0.67 | 0.896451 |
Target: 5'- gACgCGCgUGGCCUGGcgggcGUGGAGGACg- -3' miRNA: 3'- aUG-GUGgACCGGGUC-----UACCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 28936 | 0.67 | 0.896451 |
Target: 5'- gAUCACCUguguagcgcGGUCCGGggGGAGGAUg- -3' miRNA: 3'- aUGGUGGA---------CCGGGUCuaCCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 39608 | 0.67 | 0.889849 |
Target: 5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3' miRNA: 3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 239835 | 0.67 | 0.889849 |
Target: 5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3' miRNA: 3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 111266 | 0.67 | 0.88578 |
Target: 5'- aGCCAUCgucgGGCCCgccGugccagcgccgccgcGAUGGAGAACUg -3' miRNA: 3'- aUGGUGGa---CCGGG---U---------------CUACCUCUUGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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