miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 5' -56.3 NC_003521.1 + 117195 0.66 0.936181
Target:  5'- cUGCCGCC--GCCCGaggcGGUGGAGAugUc -3'
miRNA:   3'- -AUGGUGGacCGGGU----CUACCUCUugAa -5'
14464 5' -56.3 NC_003521.1 + 128201 0.66 0.936181
Target:  5'- -uCCACCUGGgCUGGGUGuAGAGCc- -3'
miRNA:   3'- auGGUGGACCgGGUCUACcUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 113324 0.66 0.936181
Target:  5'- gACCugCUGGgCCAaGAcgccGGGGGGCUUc -3'
miRNA:   3'- aUGGugGACCgGGU-CUa---CCUCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 139237 0.66 0.935694
Target:  5'- cUACCACCUGuacggggcuccucGCgCGGAgcgGGGGGACg- -3'
miRNA:   3'- -AUGGUGGAC-------------CGgGUCUa--CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 48947 0.66 0.93121
Target:  5'- cGCCGCC--GCCCAGuUGGAcGGACa- -3'
miRNA:   3'- aUGGUGGacCGGGUCuACCU-CUUGaa -5'
14464 5' -56.3 NC_003521.1 + 87349 0.66 0.926535
Target:  5'- gGCCcgaGCCggagcccgaggaggaGGCCgAGGUGGAGGACg- -3'
miRNA:   3'- aUGG---UGGa--------------CCGGgUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 83374 0.66 0.926004
Target:  5'- gAUCugCUGGCCCAacaGAgGGAGgGACUc -3'
miRNA:   3'- aUGGugGACCGGGU---CUaCCUC-UUGAa -5'
14464 5' -56.3 NC_003521.1 + 109787 0.66 0.920561
Target:  5'- cGCCGCCgccGCCCAGGagacgggacgUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGac-CGGGUCU----------ACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 120736 0.66 0.920561
Target:  5'- gGCCACCaggGGCaCCAGGUGGccgccuGGAUg- -3'
miRNA:   3'- aUGGUGGa--CCG-GGUCUACCu-----CUUGaa -5'
14464 5' -56.3 NC_003521.1 + 127081 0.66 0.914883
Target:  5'- gGCCACCgacgagaggcGGCCCAGcccguguucguaGUGGaAGAGCa- -3'
miRNA:   3'- aUGGUGGa---------CCGGGUC------------UACC-UCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 111860 0.66 0.908971
Target:  5'- cGCCGCCguacuucgUGGUgCAGAcgcuggUGGAGAACg- -3'
miRNA:   3'- aUGGUGG--------ACCGgGUCU------ACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 46678 0.66 0.908971
Target:  5'- aACCGCCc-GCCgAGGUGGAGAuGCg- -3'
miRNA:   3'- aUGGUGGacCGGgUCUACCUCU-UGaa -5'
14464 5' -56.3 NC_003521.1 + 84878 0.66 0.908971
Target:  5'- gGCCGCCcGGUCCGGGUGGcgcGAGu-- -3'
miRNA:   3'- aUGGUGGaCCGGGUCUACCu--CUUgaa -5'
14464 5' -56.3 NC_003521.1 + 157180 0.66 0.908971
Target:  5'- gUGCCgcACCUGcaagagagaaGCCCGGGUGG-GAGCg- -3'
miRNA:   3'- -AUGG--UGGAC----------CGGGUCUACCuCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 168115 0.67 0.902826
Target:  5'- cACgCGCCcggGGUCCuGGUGGaAGAACUUg -3'
miRNA:   3'- aUG-GUGGa--CCGGGuCUACC-UCUUGAA- -5'
14464 5' -56.3 NC_003521.1 + 28936 0.67 0.896451
Target:  5'- gAUCACCUguguagcgcGGUCCGGggGGAGGAUg- -3'
miRNA:   3'- aUGGUGGA---------CCGGGUCuaCCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 36772 0.67 0.896451
Target:  5'- gACgCGCgUGGCCUGGcgggcGUGGAGGACg- -3'
miRNA:   3'- aUG-GUGgACCGGGUC-----UACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 39608 0.67 0.889849
Target:  5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3'
miRNA:   3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5'
14464 5' -56.3 NC_003521.1 + 239835 0.67 0.889849
Target:  5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3'
miRNA:   3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5'
14464 5' -56.3 NC_003521.1 + 111266 0.67 0.88578
Target:  5'- aGCCAUCgucgGGCCCgccGugccagcgccgccgcGAUGGAGAACUg -3'
miRNA:   3'- aUGGUGGa---CCGGG---U---------------CUACCUCUUGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.