Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14464 | 5' | -56.3 | NC_003521.1 | + | 239835 | 0.67 | 0.889849 |
Target: 5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3' miRNA: 3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 236324 | 0.69 | 0.77646 |
Target: 5'- uUACuCAUCggGGCCCGGAcgggGGAGGACg- -3' miRNA: 3'- -AUG-GUGGa-CCGGGUCUa---CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 233713 | 0.69 | 0.794704 |
Target: 5'- -uCCACCUcagcGGCCUGGAgaaGGAGGACg- -3' miRNA: 3'- auGGUGGA----CCGGGUCUa--CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 228898 | 0.75 | 0.461371 |
Target: 5'- cACCAgCCgGGCCCGGcUGGGGGACUc -3' miRNA: 3'- aUGGU-GGaCCGGGUCuACCUCUUGAa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 201074 | 0.68 | 0.861246 |
Target: 5'- -uCCugCUGGCgCAGAUccccguggaacGGAGAACg- -3' miRNA: 3'- auGGugGACCGgGUCUA-----------CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 200399 | 0.71 | 0.689095 |
Target: 5'- gAgCACCUGGCCguGGUGGAcAGCa- -3' miRNA: 3'- aUgGUGGACCGGguCUACCUcUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 175914 | 0.67 | 0.875977 |
Target: 5'- cUGCUggggACCUGGCCCgaGGAgccggaGGAGGACa- -3' miRNA: 3'- -AUGG----UGGACCGGG--UCUa-----CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 168115 | 0.67 | 0.902826 |
Target: 5'- cACgCGCCcggGGUCCuGGUGGaAGAACUUg -3' miRNA: 3'- aUG-GUGGa--CCGGGuCUACC-UCUUGAA- -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 157180 | 0.66 | 0.908971 |
Target: 5'- gUGCCgcACCUGcaagagagaaGCCCGGGUGG-GAGCg- -3' miRNA: 3'- -AUGG--UGGAC----------CGGGUCUACCuCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 148966 | 0.68 | 0.832709 |
Target: 5'- cGCCGuCCUGGUCCgccgcccuggaggggGGAUGGgAGAGCa- -3' miRNA: 3'- aUGGU-GGACCGGG---------------UCUACC-UCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 139237 | 0.66 | 0.935694 |
Target: 5'- cUACCACCUGuacggggcuccucGCgCGGAgcgGGGGGACg- -3' miRNA: 3'- -AUGGUGGAC-------------CGgGUCUa--CCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 137605 | 0.71 | 0.718959 |
Target: 5'- cGCCGCCUGGCcggcgaccucauCCAGGucaUGGAGcGCUa -3' miRNA: 3'- aUGGUGGACCG------------GGUCU---ACCUCuUGAa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 128201 | 0.66 | 0.936181 |
Target: 5'- -uCCACCUGGgCUGGGUGuAGAGCc- -3' miRNA: 3'- auGGUGGACCgGGUCUACcUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 128173 | 0.7 | 0.767143 |
Target: 5'- -uCCAUCUGGgCCAGGUGGuAGAcgcGCUUc -3' miRNA: 3'- auGGUGGACCgGGUCUACC-UCU---UGAA- -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 127081 | 0.66 | 0.914883 |
Target: 5'- gGCCACCgacgagaggcGGCCCAGcccguguucguaGUGGaAGAGCa- -3' miRNA: 3'- aUGGUGGa---------CCGGGUC------------UACC-UCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 120736 | 0.66 | 0.920561 |
Target: 5'- gGCCACCaggGGCaCCAGGUGGccgccuGGAUg- -3' miRNA: 3'- aUGGUGGa--CCG-GGUCUACCu-----CUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 117397 | 0.69 | 0.77646 |
Target: 5'- cACgCGCugugCUGGCaCCGGGUGGAGGGCg- -3' miRNA: 3'- aUG-GUG----GACCG-GGUCUACCUCUUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 117195 | 0.66 | 0.936181 |
Target: 5'- cUGCCGCC--GCCCGaggcGGUGGAGAugUc -3' miRNA: 3'- -AUGGUGGacCGGGU----CUACCUCUugAa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 114688 | 0.72 | 0.648663 |
Target: 5'- cGCCGCCUGGCCCuacGUGGGucGCg- -3' miRNA: 3'- aUGGUGGACCGGGuc-UACCUcuUGaa -5' |
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14464 | 5' | -56.3 | NC_003521.1 | + | 113324 | 0.66 | 0.936181 |
Target: 5'- gACCugCUGGgCCAaGAcgccGGGGGGCUUc -3' miRNA: 3'- aUGGugGACCgGGU-CUa---CCUCUUGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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