miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14464 5' -56.3 NC_003521.1 + 36702 0.72 0.658811
Target:  5'- cGgCGCCUGGCCCgagcAGGUGGAGGcGCa- -3'
miRNA:   3'- aUgGUGGACCGGG----UCUACCUCU-UGaa -5'
14464 5' -56.3 NC_003521.1 + 127081 0.66 0.914883
Target:  5'- gGCCACCgacgagaggcGGCCCAGcccguguucguaGUGGaAGAGCa- -3'
miRNA:   3'- aUGGUGGa---------CCGGGUC------------UACC-UCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 48947 0.66 0.93121
Target:  5'- cGCCGCC--GCCCAGuUGGAcGGACa- -3'
miRNA:   3'- aUGGUGGacCGGGUCuACCU-CUUGaa -5'
14464 5' -56.3 NC_003521.1 + 128201 0.66 0.936181
Target:  5'- -uCCACCUGGgCUGGGUGuAGAGCc- -3'
miRNA:   3'- auGGUGGACCgGGUCUACcUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 16813 0.7 0.757707
Target:  5'- gACCGCCgGGCCCgccgcugccgcaGGA-GGAGGACa- -3'
miRNA:   3'- aUGGUGGaCCGGG------------UCUaCCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 16890 0.7 0.757707
Target:  5'- gGCCAUCUGGaggAGGUGGAGGACg- -3'
miRNA:   3'- aUGGUGGACCgggUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 236324 0.69 0.77646
Target:  5'- uUACuCAUCggGGCCCGGAcgggGGAGGACg- -3'
miRNA:   3'- -AUG-GUGGa-CCGGGUCUa---CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 117397 0.69 0.77646
Target:  5'- cACgCGCugugCUGGCaCCGGGUGGAGGGCg- -3'
miRNA:   3'- aUG-GUG----GACCG-GGUCUACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 847 0.68 0.861246
Target:  5'- -uCCugCUGGCgCAGAUccccguggaacGGAGAACg- -3'
miRNA:   3'- auGGugGACCGgGUCUA-----------CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 111860 0.66 0.908971
Target:  5'- cGCCGCCguacuucgUGGUgCAGAcgcuggUGGAGAACg- -3'
miRNA:   3'- aUGGUGG--------ACCGgGUCU------ACCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 39608 0.67 0.889849
Target:  5'- gUACgGCC-GGCCCAGcgGGAGcaGACc- -3'
miRNA:   3'- -AUGgUGGaCCGGGUCuaCCUC--UUGaa -5'
14464 5' -56.3 NC_003521.1 + 148966 0.68 0.832709
Target:  5'- cGCCGuCCUGGUCCgccgcccuggaggggGGAUGGgAGAGCa- -3'
miRNA:   3'- aUGGU-GGACCGGG---------------UCUACC-UCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 200399 0.71 0.689095
Target:  5'- gAgCACCUGGCCguGGUGGAcAGCa- -3'
miRNA:   3'- aUgGUGGACCGGguCUACCUcUUGaa -5'
14464 5' -56.3 NC_003521.1 + 28936 0.67 0.896451
Target:  5'- gAUCACCUguguagcgcGGUCCGGggGGAGGAUg- -3'
miRNA:   3'- aUGGUGGA---------CCGGGUCuaCCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 137605 0.71 0.718959
Target:  5'- cGCCGCCUGGCcggcgaccucauCCAGGucaUGGAGcGCUa -3'
miRNA:   3'- aUGGUGGACCG------------GGUCU---ACCUCuUGAa -5'
14464 5' -56.3 NC_003521.1 + 8625 0.69 0.803613
Target:  5'- cACCACCcgcgggGGCCCAuGGcgugGGAGGACg- -3'
miRNA:   3'- aUGGUGGa-----CCGGGU-CUa---CCUCUUGaa -5'
14464 5' -56.3 NC_003521.1 + 46678 0.66 0.908971
Target:  5'- aACCGCCc-GCCgAGGUGGAGAuGCg- -3'
miRNA:   3'- aUGGUGGacCGGgUCUACCUCU-UGaa -5'
14464 5' -56.3 NC_003521.1 + 109787 0.66 0.920561
Target:  5'- cGCCGCCgccGCCCAGGagacgggacgUGGAGGAg-- -3'
miRNA:   3'- aUGGUGGac-CGGGUCU----------ACCUCUUgaa -5'
14464 5' -56.3 NC_003521.1 + 94291 0.7 0.738516
Target:  5'- cGCCGCCggagGGaCCCGGGUGGAGc---- -3'
miRNA:   3'- aUGGUGGa---CC-GGGUCUACCUCuugaa -5'
14464 5' -56.3 NC_003521.1 + 128173 0.7 0.767143
Target:  5'- -uCCAUCUGGgCCAGGUGGuAGAcgcGCUUc -3'
miRNA:   3'- auGGUGGACCgGGUCUACC-UCU---UGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.