miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 3' -51.7 NC_003521.1 + 128683 1.09 0.010225
Target:  5'- cCGAGAGCAGCGACAUGAUGAUCUGCAu -3'
miRNA:   3'- -GCUCUCGUCGCUGUACUACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 47233 0.83 0.35622
Target:  5'- aGAGGGCGaaaaccGCGACcgGGUGAUCUGCGa -3'
miRNA:   3'- gCUCUCGU------CGCUGuaCUACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 220503 0.77 0.691232
Target:  5'- gGAGAGCAGCaGCGUGGUGGccuccuggugCUGCAu -3'
miRNA:   3'- gCUCUCGUCGcUGUACUACUa---------GACGU- -5'
14485 3' -51.7 NC_003521.1 + 180105 0.76 0.731434
Target:  5'- gGAGGGCAGCGGCGUGGUGcgacCcGCGc -3'
miRNA:   3'- gCUCUCGUCGCUGUACUACua--GaCGU- -5'
14485 3' -51.7 NC_003521.1 + 172082 0.74 0.841277
Target:  5'- cCGucAGCGGCGGCGUGAUGAagUCcgUGCGg -3'
miRNA:   3'- -GCucUCGUCGCUGUACUACU--AG--ACGU- -5'
14485 3' -51.7 NC_003521.1 + 123615 0.74 0.841277
Target:  5'- aGGGgcagccgccguAGCAGCGGCGUGAUGAUgcGCAg -3'
miRNA:   3'- gCUC-----------UCGUCGCUGUACUACUAgaCGU- -5'
14485 3' -51.7 NC_003521.1 + 112102 0.73 0.857266
Target:  5'- -aAGAuCAGCGGCGUGAUGGUgaGCAc -3'
miRNA:   3'- gcUCUcGUCGCUGUACUACUAgaCGU- -5'
14485 3' -51.7 NC_003521.1 + 214313 0.72 0.89352
Target:  5'- aCGGuGAGCAGCGugGUGGUGAagaGCGc -3'
miRNA:   3'- -GCU-CUCGUCGCugUACUACUagaCGU- -5'
14485 3' -51.7 NC_003521.1 + 52617 0.72 0.900091
Target:  5'- aCGAGuGGCAG-GACcgGGUGAUcCUGCGu -3'
miRNA:   3'- -GCUC-UCGUCgCUGuaCUACUA-GACGU- -5'
14485 3' -51.7 NC_003521.1 + 123224 0.7 0.944023
Target:  5'- aCGGGGGCGGCGGUA-GGUGGUCguaGCGc -3'
miRNA:   3'- -GCUCUCGUCGCUGUaCUACUAGa--CGU- -5'
14485 3' -51.7 NC_003521.1 + 52053 0.7 0.948429
Target:  5'- aCGAGcAGCAGCGGCA-GAUGAcgCgggGCc -3'
miRNA:   3'- -GCUC-UCGUCGCUGUaCUACUa-Ga--CGu -5'
14485 3' -51.7 NC_003521.1 + 197551 0.7 0.952599
Target:  5'- aCGAGAGCGGCGGCGagcuccUGAgcucggGAgcuggcgCUGCu -3'
miRNA:   3'- -GCUCUCGUCGCUGU------ACUa-----CUa------GACGu -5'
14485 3' -51.7 NC_003521.1 + 52281 0.7 0.960245
Target:  5'- -cGGAGCGGCGuuCAUGGUGAUg-GCGa -3'
miRNA:   3'- gcUCUCGUCGCu-GUACUACUAgaCGU- -5'
14485 3' -51.7 NC_003521.1 + 28303 0.7 0.962707
Target:  5'- aCGAGAGCAGCGGCAgcgaccccggcgcGGcCUGCGg -3'
miRNA:   3'- -GCUCUCGUCGCUGUacua---------CUaGACGU- -5'
14485 3' -51.7 NC_003521.1 + 128479 0.69 0.970045
Target:  5'- --uGGGCAGCGGCGUGAgg--CUGUg -3'
miRNA:   3'- gcuCUCGUCGCUGUACUacuaGACGu -5'
14485 3' -51.7 NC_003521.1 + 47481 0.69 0.972889
Target:  5'- aGAcGAGCGGCGACAUGG-GAaCgaagGCGa -3'
miRNA:   3'- gCU-CUCGUCGCUGUACUaCUaGa---CGU- -5'
14485 3' -51.7 NC_003521.1 + 111376 0.69 0.972889
Target:  5'- cCGGGAcuaGCGGCGACGgagggGAcGcgCUGCAg -3'
miRNA:   3'- -GCUCU---CGUCGCUGUa----CUaCuaGACGU- -5'
14485 3' -51.7 NC_003521.1 + 163005 0.69 0.972889
Target:  5'- aCGAGAGC-GCGcugcuCAccAUGAUCUGCGa -3'
miRNA:   3'- -GCUCUCGuCGCu----GUacUACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 66375 0.69 0.972889
Target:  5'- gCGGcGAGCAGCGACAccagcgcgUGcGUGAaacgCUGCAc -3'
miRNA:   3'- -GCU-CUCGUCGCUGU--------AC-UACUa---GACGU- -5'
14485 3' -51.7 NC_003521.1 + 74570 0.69 0.975533
Target:  5'- uGAGGGCGGCGACGgagcgGcgGcgCgGCGu -3'
miRNA:   3'- gCUCUCGUCGCUGUa----CuaCuaGaCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.