Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14485 | 3' | -51.7 | NC_003521.1 | + | 155598 | 0.67 | 0.993598 |
Target: 5'- aCGAGAGCAGCaGCAggaGGUGGcgaccgCUGUu -3' miRNA: 3'- -GCUCUCGUCGcUGUa--CUACUa-----GACGu -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 212578 | 0.68 | 0.982333 |
Target: 5'- uGAGAGCGGUGuaaacCAUGAUcAUCaGCAg -3' miRNA: 3'- gCUCUCGUCGCu----GUACUAcUAGaCGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 223085 | 0.68 | 0.984249 |
Target: 5'- gGAGGcCAGCGaACGUGcguaGAUCUGCGg -3' miRNA: 3'- gCUCUcGUCGC-UGUACua--CUAGACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 168587 | 0.68 | 0.986003 |
Target: 5'- uGAcccAGCGGCGGCAUGGacaUGggCUGCu -3' miRNA: 3'- gCUc--UCGUCGCUGUACU---ACuaGACGu -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 38241 | 0.68 | 0.987603 |
Target: 5'- gGAGAGCAuUGACGccGGUGAUCUcaGCGg -3' miRNA: 3'- gCUCUCGUcGCUGUa-CUACUAGA--CGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 116086 | 0.67 | 0.989058 |
Target: 5'- gCGAGuGCAGCGGCuguccgcgcGAcaucuuuucgcUGAUCUGUAa -3' miRNA: 3'- -GCUCuCGUCGCUGua-------CU-----------ACUAGACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 229493 | 0.67 | 0.989058 |
Target: 5'- aCGAGAGUAaccgagucuuGCGACAgcuacGAUGGUCacaGCAg -3' miRNA: 3'- -GCUCUCGU----------CGCUGUa----CUACUAGa--CGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 126754 | 0.67 | 0.991223 |
Target: 5'- aCGAacuGCAGCGACGUGAaguccggcaggcccUGGcgCUGCGc -3' miRNA: 3'- -GCUcu-CGUCGCUGUACU--------------ACUa-GACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 130495 | 0.67 | 0.993598 |
Target: 5'- gCGAGcgcGGCcGCGuCAUGAUGGccCUGCGg -3' miRNA: 3'- -GCUC---UCGuCGCuGUACUACUa-GACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 74570 | 0.69 | 0.975533 |
Target: 5'- uGAGGGCGGCGACGgagcgGcgGcgCgGCGu -3' miRNA: 3'- gCUCUCGUCGCUGUa----CuaCuaGaCGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 111376 | 0.69 | 0.972889 |
Target: 5'- cCGGGAcuaGCGGCGACGgagggGAcGcgCUGCAg -3' miRNA: 3'- -GCUCU---CGUCGCUGUa----CUaCuaGACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 163005 | 0.69 | 0.972889 |
Target: 5'- aCGAGAGC-GCGcugcuCAccAUGAUCUGCGa -3' miRNA: 3'- -GCUCUCGuCGCu----GUacUACUAGACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 220503 | 0.77 | 0.691232 |
Target: 5'- gGAGAGCAGCaGCGUGGUGGccuccuggugCUGCAu -3' miRNA: 3'- gCUCUCGUCGcUGUACUACUa---------GACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 123615 | 0.74 | 0.841277 |
Target: 5'- aGGGgcagccgccguAGCAGCGGCGUGAUGAUgcGCAg -3' miRNA: 3'- gCUC-----------UCGUCGCUGUACUACUAgaCGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 214313 | 0.72 | 0.89352 |
Target: 5'- aCGGuGAGCAGCGugGUGGUGAagaGCGc -3' miRNA: 3'- -GCU-CUCGUCGCugUACUACUagaCGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 197551 | 0.7 | 0.952599 |
Target: 5'- aCGAGAGCGGCGGCGagcuccUGAgcucggGAgcuggcgCUGCu -3' miRNA: 3'- -GCUCUCGUCGCUGU------ACUa-----CUa------GACGu -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 52281 | 0.7 | 0.960245 |
Target: 5'- -cGGAGCGGCGuuCAUGGUGAUg-GCGa -3' miRNA: 3'- gcUCUCGUCGCu-GUACUACUAgaCGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 28303 | 0.7 | 0.962707 |
Target: 5'- aCGAGAGCAGCGGCAgcgaccccggcgcGGcCUGCGg -3' miRNA: 3'- -GCUCUCGUCGCUGUacua---------CUaGACGU- -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 128479 | 0.69 | 0.970045 |
Target: 5'- --uGGGCAGCGGCGUGAgg--CUGUg -3' miRNA: 3'- gcuCUCGUCGCUGUACUacuaGACGu -5' |
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14485 | 3' | -51.7 | NC_003521.1 | + | 66375 | 0.69 | 0.972889 |
Target: 5'- gCGGcGAGCAGCGACAccagcgcgUGcGUGAaacgCUGCAc -3' miRNA: 3'- -GCU-CUCGUCGCUGU--------AC-UACUa---GACGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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