miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 3' -51.7 NC_003521.1 + 7433 0.67 0.990377
Target:  5'- cCGAGAcgGCAGCGGCAgcuccgGAUCccgGCGa -3'
miRNA:   3'- -GCUCU--CGUCGCUGUacua--CUAGa--CGU- -5'
14485 3' -51.7 NC_003521.1 + 8092 0.66 0.99589
Target:  5'- aGGGAucGCAGCGGCucgGAgucGUCUGCc -3'
miRNA:   3'- gCUCU--CGUCGCUGua-CUac-UAGACGu -5'
14485 3' -51.7 NC_003521.1 + 19163 0.66 0.99477
Target:  5'- cCGAGAGCA-CGGCGcUGGUGGccgacgugcacgagCUGCAg -3'
miRNA:   3'- -GCUCUCGUcGCUGU-ACUACUa-------------GACGU- -5'
14485 3' -51.7 NC_003521.1 + 20718 0.66 0.995891
Target:  5'- ---uGGCGcGUGACGUGAUGAUCgucaGCGg -3'
miRNA:   3'- gcucUCGU-CGCUGUACUACUAGa---CGU- -5'
14485 3' -51.7 NC_003521.1 + 23274 0.68 0.987603
Target:  5'- uGAcGGCgAGCGACGUGcaccgcuuccUGGUCUGCAc -3'
miRNA:   3'- gCUcUCG-UCGCUGUACu---------ACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 24243 0.68 0.985835
Target:  5'- gCGAGAGCgacgaggaacaggAGCGAUAUGAagcgucccUGGccgCUGCAc -3'
miRNA:   3'- -GCUCUCG-------------UCGCUGUACU--------ACUa--GACGU- -5'
14485 3' -51.7 NC_003521.1 + 28078 0.66 0.995216
Target:  5'- --uGAGCAGCGcCAcguUGGUGGccaccauccUCUGCAu -3'
miRNA:   3'- gcuCUCGUCGCuGU---ACUACU---------AGACGU- -5'
14485 3' -51.7 NC_003521.1 + 28303 0.7 0.962707
Target:  5'- aCGAGAGCAGCGGCAgcgaccccggcgcGGcCUGCGg -3'
miRNA:   3'- -GCUCUCGUCGCUGUacua---------CUaGACGU- -5'
14485 3' -51.7 NC_003521.1 + 38241 0.68 0.987603
Target:  5'- gGAGAGCAuUGACGccGGUGAUCUcaGCGg -3'
miRNA:   3'- gCUCUCGUcGCUGUa-CUACUAGA--CGU- -5'
14485 3' -51.7 NC_003521.1 + 47233 0.83 0.35622
Target:  5'- aGAGGGCGaaaaccGCGACcgGGUGAUCUGCGa -3'
miRNA:   3'- gCUCUCGU------CGCUGuaCUACUAGACGU- -5'
14485 3' -51.7 NC_003521.1 + 47481 0.69 0.972889
Target:  5'- aGAcGAGCGGCGACAUGG-GAaCgaagGCGa -3'
miRNA:   3'- gCU-CUCGUCGCUGUACUaCUaGa---CGU- -5'
14485 3' -51.7 NC_003521.1 + 52053 0.7 0.948429
Target:  5'- aCGAGcAGCAGCGGCA-GAUGAcgCgggGCc -3'
miRNA:   3'- -GCUC-UCGUCGCUGUaCUACUa-Ga--CGu -5'
14485 3' -51.7 NC_003521.1 + 52281 0.7 0.960245
Target:  5'- -cGGAGCGGCGuuCAUGGUGAUg-GCGa -3'
miRNA:   3'- gcUCUCGUCGCu-GUACUACUAgaCGU- -5'
14485 3' -51.7 NC_003521.1 + 52617 0.72 0.900091
Target:  5'- aCGAGuGGCAG-GACcgGGUGAUcCUGCGu -3'
miRNA:   3'- -GCUC-UCGUCgCUGuaCUACUA-GACGU- -5'
14485 3' -51.7 NC_003521.1 + 66117 0.68 0.987603
Target:  5'- gGAGAGUAGgGACcUG-UGG-CUGCAg -3'
miRNA:   3'- gCUCUCGUCgCUGuACuACUaGACGU- -5'
14485 3' -51.7 NC_003521.1 + 66375 0.69 0.972889
Target:  5'- gCGGcGAGCAGCGACAccagcgcgUGcGUGAaacgCUGCAc -3'
miRNA:   3'- -GCU-CUCGUCGCUGU--------AC-UACUa---GACGU- -5'
14485 3' -51.7 NC_003521.1 + 69070 0.67 0.990868
Target:  5'- cCGAGAGUgacccgugucaugauGGUGGCGUGGUGGUacuuggugUGCAc -3'
miRNA:   3'- -GCUCUCG---------------UCGCUGUACUACUAg-------ACGU- -5'
14485 3' -51.7 NC_003521.1 + 73141 0.66 0.996485
Target:  5'- gCGGGGGCAGCGGCG-GcgGcgCcGCc -3'
miRNA:   3'- -GCUCUCGUCGCUGUaCuaCuaGaCGu -5'
14485 3' -51.7 NC_003521.1 + 74570 0.69 0.975533
Target:  5'- uGAGGGCGGCGACGgagcgGcgGcgCgGCGu -3'
miRNA:   3'- gCUCUCGUCGCUGUa----CuaCuaGaCGU- -5'
14485 3' -51.7 NC_003521.1 + 76319 0.67 0.993953
Target:  5'- gGAGguGGCGGCGACAgcugcggaggcgacGGUGAcggCUGCGg -3'
miRNA:   3'- gCUC--UCGUCGCUGUa-------------CUACUa--GACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.