miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 5' -55.2 NC_003521.1 + 128719 0.99 0.025507
Target:  5'- cCGUGCUCACCAUCACGCCGCUGAc-- -3'
miRNA:   3'- -GCACGAGUGGUAGUGCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 198756 0.76 0.530159
Target:  5'- cCGUGCUCGCUgGUCGCGCCGCUcGUg- -3'
miRNA:   3'- -GCACGAGUGG-UAGUGCGGCGAcUAga -5'
14485 5' -55.2 NC_003521.1 + 195275 0.75 0.589087
Target:  5'- --cGCUCACCAuUCGcCGCCGCUGAc-- -3'
miRNA:   3'- gcaCGAGUGGU-AGU-GCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 101377 0.75 0.589088
Target:  5'- gGUGCgcgaGCCGUCGCGCCGCUuGAc-- -3'
miRNA:   3'- gCACGag--UGGUAGUGCGGCGA-CUaga -5'
14485 5' -55.2 NC_003521.1 + 226558 0.74 0.659064
Target:  5'- aCGcUGUcgUCACgAUCGCGCCGCgGAUCg -3'
miRNA:   3'- -GC-ACG--AGUGgUAGUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 65359 0.74 0.659064
Target:  5'- aCGUGCUguCCGgggagacggCGCGCCGCcGAUCg -3'
miRNA:   3'- -GCACGAguGGUa--------GUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 167576 0.74 0.659064
Target:  5'- --cGCUCGUCGUCACGCCGCUGcuGUUg -3'
miRNA:   3'- gcaCGAGUGGUAGUGCGGCGAC--UAGa -5'
14485 5' -55.2 NC_003521.1 + 169150 0.73 0.677992
Target:  5'- gCGUGCUCACCAagugcguggUGCGCCGCUccaacucggccucGGUCUu -3'
miRNA:   3'- -GCACGAGUGGUa--------GUGCGGCGA-------------CUAGA- -5'
14485 5' -55.2 NC_003521.1 + 117193 0.73 0.698758
Target:  5'- gCGcUGCgCAUCAUCACGCCGCUGc--- -3'
miRNA:   3'- -GC-ACGaGUGGUAGUGCGGCGACuaga -5'
14485 5' -55.2 NC_003521.1 + 181046 0.73 0.698758
Target:  5'- uCGcGCUCGCCGUUA--CCGCUGAUCa -3'
miRNA:   3'- -GCaCGAGUGGUAGUgcGGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 129979 0.73 0.727995
Target:  5'- aCGUGC--ACCGUCGCuGCCGCUGcgCc -3'
miRNA:   3'- -GCACGagUGGUAGUG-CGGCGACuaGa -5'
14485 5' -55.2 NC_003521.1 + 53452 0.72 0.756518
Target:  5'- cCGcUGCUCACCGUCGucgggaUGCUGCUGcUCg -3'
miRNA:   3'- -GC-ACGAGUGGUAGU------GCGGCGACuAGa -5'
14485 5' -55.2 NC_003521.1 + 35441 0.71 0.809639
Target:  5'- aGUGCgUCGugauaguCCAUCAUGCCGCgcaGGUCg -3'
miRNA:   3'- gCACG-AGU-------GGUAGUGCGGCGa--CUAGa -5'
14485 5' -55.2 NC_003521.1 + 117761 0.71 0.810498
Target:  5'- uGUGCUCAaggCGUCgcacACGCUGCgGAUCUa -3'
miRNA:   3'- gCACGAGUg--GUAG----UGCGGCGaCUAGA- -5'
14485 5' -55.2 NC_003521.1 + 221673 0.71 0.810498
Target:  5'- cCGUGCUCucggUCAcCACGCCGUgGGUCUc -3'
miRNA:   3'- -GCACGAGu---GGUaGUGCGGCGaCUAGA- -5'
14485 5' -55.2 NC_003521.1 + 217554 0.71 0.827338
Target:  5'- gGUGCacgucgUCGCCGUCAUGgCGgaGAUCa -3'
miRNA:   3'- gCACG------AGUGGUAGUGCgGCgaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 225776 0.7 0.835507
Target:  5'- --cGCUCGCgcUCGCGCCGCUcGUCa -3'
miRNA:   3'- gcaCGAGUGguAGUGCGGCGAcUAGa -5'
14485 5' -55.2 NC_003521.1 + 158572 0.7 0.835507
Target:  5'- gGUGCUCACCuUC-CGCCGCa----- -3'
miRNA:   3'- gCACGAGUGGuAGuGCGGCGacuaga -5'
14485 5' -55.2 NC_003521.1 + 2718 0.7 0.843499
Target:  5'- uCGUGCgggagCGCCGUCAcCGCCucGCUGG-CUg -3'
miRNA:   3'- -GCACGa----GUGGUAGU-GCGG--CGACUaGA- -5'
14485 5' -55.2 NC_003521.1 + 206881 0.7 0.851307
Target:  5'- -cUGCUCGCCGcgCACGCCGCa----- -3'
miRNA:   3'- gcACGAGUGGUa-GUGCGGCGacuaga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.