miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 5' -55.2 NC_003521.1 + 2718 0.7 0.843499
Target:  5'- uCGUGCgggagCGCCGUCAcCGCCucGCUGG-CUg -3'
miRNA:   3'- -GCACGa----GUGGUAGU-GCGG--CGACUaGA- -5'
14485 5' -55.2 NC_003521.1 + 4987 0.67 0.938576
Target:  5'- gGUGcCUCACCAUCcCGCgucagaCGCUGAc-- -3'
miRNA:   3'- gCAC-GAGUGGUAGuGCG------GCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 19714 0.66 0.97434
Target:  5'- -cUGCUgACCuaCACGCUGCUGAc-- -3'
miRNA:   3'- gcACGAgUGGuaGUGCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 23409 0.69 0.873566
Target:  5'- uGUGCUgCACCGgcuUCAUGCCGCcGcUCa -3'
miRNA:   3'- gCACGA-GUGGU---AGUGCGGCGaCuAGa -5'
14485 5' -55.2 NC_003521.1 + 24640 0.67 0.951556
Target:  5'- gGUGCUCAgcgccuUCGUCcugGCGCUGgUGGUCa -3'
miRNA:   3'- gCACGAGU------GGUAG---UGCGGCgACUAGa -5'
14485 5' -55.2 NC_003521.1 + 29111 0.67 0.951556
Target:  5'- --cGCcgCACCAUC-CGCgCGCUGcgCUg -3'
miRNA:   3'- gcaCGa-GUGGUAGuGCG-GCGACuaGA- -5'
14485 5' -55.2 NC_003521.1 + 34698 0.67 0.959104
Target:  5'- cCGUuCUCAgCAUCGCGCagcaGCUGAc-- -3'
miRNA:   3'- -GCAcGAGUgGUAGUGCGg---CGACUaga -5'
14485 5' -55.2 NC_003521.1 + 35441 0.71 0.809639
Target:  5'- aGUGCgUCGugauaguCCAUCAUGCCGCgcaGGUCg -3'
miRNA:   3'- gCACG-AGU-------GGUAGUGCGGCGa--CUAGa -5'
14485 5' -55.2 NC_003521.1 + 38610 0.68 0.914702
Target:  5'- gGUGUUCGCCGUaugcguuauuagaggCGCGCCgGCUGGg-- -3'
miRNA:   3'- gCACGAGUGGUA---------------GUGCGG-CGACUaga -5'
14485 5' -55.2 NC_003521.1 + 40333 0.66 0.972771
Target:  5'- gGUGCgCGCCGccaguuuggccaggaUCACGgCGCUGcgCa -3'
miRNA:   3'- gCACGaGUGGU---------------AGUGCgGCGACuaGa -5'
14485 5' -55.2 NC_003521.1 + 47901 0.69 0.908872
Target:  5'- --gGCUCGCCguccugAuggcccugacggccuUCGCGCUGCUGAUCg -3'
miRNA:   3'- gcaCGAGUGG------U---------------AGUGCGGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 48019 0.68 0.933797
Target:  5'- --cGUUCACCGUCACGUugguuaUGCUGAcguUCa -3'
miRNA:   3'- gcaCGAGUGGUAGUGCG------GCGACU---AGa -5'
14485 5' -55.2 NC_003521.1 + 49471 0.67 0.960511
Target:  5'- -cUGCUCacacuuaugguauugGCCGUCgGCGCC-CUGAUCg -3'
miRNA:   3'- gcACGAG---------------UGGUAG-UGCGGcGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 53452 0.72 0.756518
Target:  5'- cCGcUGCUCACCGUCGucgggaUGCUGCUGcUCg -3'
miRNA:   3'- -GC-ACGAGUGGUAGU------GCGGCGACuAGa -5'
14485 5' -55.2 NC_003521.1 + 65359 0.74 0.659064
Target:  5'- aCGUGCUguCCGgggagacggCGCGCCGCcGAUCg -3'
miRNA:   3'- -GCACGAguGGUa--------GUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 77506 0.7 0.858925
Target:  5'- aGUGC-CGC--UCGCGCCGCUGAc-- -3'
miRNA:   3'- gCACGaGUGguAGUGCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 81943 0.7 0.858925
Target:  5'- gGUGgUCACCGUCACcaugcaguuaagGCUGCaGGUCUc -3'
miRNA:   3'- gCACgAGUGGUAGUG------------CGGCGaCUAGA- -5'
14485 5' -55.2 NC_003521.1 + 88751 0.67 0.951556
Target:  5'- --aGgaCGCCAUCACGCaGCUGAa-- -3'
miRNA:   3'- gcaCgaGUGGUAGUGCGgCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 96556 0.69 0.887381
Target:  5'- cCGUGCUCGCCcagcagaCAgGCgugguaGCUGAUCUg -3'
miRNA:   3'- -GCACGAGUGGua-----GUgCGg-----CGACUAGA- -5'
14485 5' -55.2 NC_003521.1 + 100698 0.66 0.971688
Target:  5'- -aUGCggaggCGCCGcCGCgGCCGCUGAUg- -3'
miRNA:   3'- gcACGa----GUGGUaGUG-CGGCGACUAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.