miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14485 5' -55.2 NC_003521.1 + 220258 0.69 0.893967
Target:  5'- -aUGaacaUCACCGUCACGuuGCUGGg-- -3'
miRNA:   3'- gcACg---AGUGGUAGUGCggCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 206881 0.7 0.851307
Target:  5'- -cUGCUCGCCGcgCACGCCGCa----- -3'
miRNA:   3'- gcACGAGUGGUa-GUGCGGCGacuaga -5'
14485 5' -55.2 NC_003521.1 + 77506 0.7 0.858925
Target:  5'- aGUGC-CGC--UCGCGCCGCUGAc-- -3'
miRNA:   3'- gCACGaGUGguAGUGCGGCGACUaga -5'
14485 5' -55.2 NC_003521.1 + 81943 0.7 0.858925
Target:  5'- gGUGgUCACCGUCACcaugcaguuaagGCUGCaGGUCUc -3'
miRNA:   3'- gCACgAGUGGUAGUG------------CGGCGaCUAGA- -5'
14485 5' -55.2 NC_003521.1 + 142176 0.7 0.858925
Target:  5'- --aGCUCGCCGUCgucgACGCCGCUa---- -3'
miRNA:   3'- gcaCGAGUGGUAG----UGCGGCGAcuaga -5'
14485 5' -55.2 NC_003521.1 + 137655 0.69 0.880579
Target:  5'- aCGUGCUCAU--UCGCGCCGUgcgcgacgaGAUCc -3'
miRNA:   3'- -GCACGAGUGguAGUGCGGCGa--------CUAGa -5'
14485 5' -55.2 NC_003521.1 + 156402 0.69 0.880579
Target:  5'- --cGCuUCGCCAcCcUGCCGCUGGUCa -3'
miRNA:   3'- gcaCG-AGUGGUaGuGCGGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 166264 0.69 0.880579
Target:  5'- cCGUGCUCACgGgcaCGCGCacggcgcgGCUGGUCc -3'
miRNA:   3'- -GCACGAGUGgUa--GUGCGg-------CGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 214365 0.69 0.887381
Target:  5'- gGUGCUC-CCAggcCACGCCGUUGc--- -3'
miRNA:   3'- gCACGAGuGGUa--GUGCGGCGACuaga -5'
14485 5' -55.2 NC_003521.1 + 128023 0.7 0.851307
Target:  5'- cCGUGCgcggCACC-UCGCGCCGCa----- -3'
miRNA:   3'- -GCACGa---GUGGuAGUGCGGCGacuaga -5'
14485 5' -55.2 NC_003521.1 + 2718 0.7 0.843499
Target:  5'- uCGUGCgggagCGCCGUCAcCGCCucGCUGG-CUg -3'
miRNA:   3'- -GCACGa----GUGGUAGU-GCGG--CGACUaGA- -5'
14485 5' -55.2 NC_003521.1 + 225776 0.7 0.835507
Target:  5'- --cGCUCGCgcUCGCGCCGCUcGUCa -3'
miRNA:   3'- gcaCGAGUGguAGUGCGGCGAcUAGa -5'
14485 5' -55.2 NC_003521.1 + 101377 0.75 0.589088
Target:  5'- gGUGCgcgaGCCGUCGCGCCGCUuGAc-- -3'
miRNA:   3'- gCACGag--UGGUAGUGCGGCGA-CUaga -5'
14485 5' -55.2 NC_003521.1 + 226558 0.74 0.659064
Target:  5'- aCGcUGUcgUCACgAUCGCGCCGCgGAUCg -3'
miRNA:   3'- -GC-ACG--AGUGgUAGUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 65359 0.74 0.659064
Target:  5'- aCGUGCUguCCGgggagacggCGCGCCGCcGAUCg -3'
miRNA:   3'- -GCACGAguGGUa--------GUGCGGCGaCUAGa -5'
14485 5' -55.2 NC_003521.1 + 167576 0.74 0.659064
Target:  5'- --cGCUCGUCGUCACGCCGCUGcuGUUg -3'
miRNA:   3'- gcaCGAGUGGUAGUGCGGCGAC--UAGa -5'
14485 5' -55.2 NC_003521.1 + 181046 0.73 0.698758
Target:  5'- uCGcGCUCGCCGUUA--CCGCUGAUCa -3'
miRNA:   3'- -GCaCGAGUGGUAGUgcGGCGACUAGa -5'
14485 5' -55.2 NC_003521.1 + 129979 0.73 0.727995
Target:  5'- aCGUGC--ACCGUCGCuGCCGCUGcgCc -3'
miRNA:   3'- -GCACGagUGGUAGUG-CGGCGACuaGa -5'
14485 5' -55.2 NC_003521.1 + 35441 0.71 0.809639
Target:  5'- aGUGCgUCGugauaguCCAUCAUGCCGCgcaGGUCg -3'
miRNA:   3'- gCACG-AGU-------GGUAGUGCGGCGa--CUAGa -5'
14485 5' -55.2 NC_003521.1 + 217554 0.71 0.827338
Target:  5'- gGUGCacgucgUCGCCGUCAUGgCGgaGAUCa -3'
miRNA:   3'- gCACG------AGUGGUAGUGCgGCgaCUAGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.