miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 132574 1.09 0.017262
Target:  5'- cCGGUCGACACCAGAAGAUGAUGGAAGc -3'
miRNA:   3'- -GCCAGCUGUGGUCUUCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 148351 0.8 0.662051
Target:  5'- aGGUCaGCACCAuGAAGAcGAUGGAGGc -3'
miRNA:   3'- gCCAGcUGUGGU-CUUCUaCUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 89701 0.79 0.692611
Target:  5'- aCGGagGACAgCAGAGGAgagcgGGUGGAAGa -3'
miRNA:   3'- -GCCagCUGUgGUCUUCUa----CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 151103 0.76 0.833571
Target:  5'- gGGUCGGgcCGCUGGggGAUGgcGGggGg -3'
miRNA:   3'- gCCAGCU--GUGGUCuuCUACuaCCuuC- -5'
14493 5' -50.3 NC_003521.1 + 125174 0.76 0.833571
Target:  5'- uGGUCGAaggugCAGAAGAUGGUGGAc- -3'
miRNA:   3'- gCCAGCUgug--GUCUUCUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 193265 0.76 0.849856
Target:  5'- aCGGUCGGCugCGGAgcGGGUGccGGGAc -3'
miRNA:   3'- -GCCAGCUGugGUCU--UCUACuaCCUUc -5'
14493 5' -50.3 NC_003521.1 + 118671 0.75 0.865347
Target:  5'- gGGUCGGCuuCGGGAGGcggcgguaccgcUGGUGGAGGg -3'
miRNA:   3'- gCCAGCUGugGUCUUCU------------ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 94701 0.75 0.886984
Target:  5'- uGGcCGACACCAGAuAGAcGGUGGGcAGg -3'
miRNA:   3'- gCCaGCUGUGGUCU-UCUaCUACCU-UC- -5'
14493 5' -50.3 NC_003521.1 + 33849 0.73 0.934509
Target:  5'- gCGGUCGACGauagaGGGAGAUaGAgagGGAAGg -3'
miRNA:   3'- -GCCAGCUGUgg---UCUUCUA-CUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 37899 0.72 0.960162
Target:  5'- -cGUCGuACAUCGGAAGcgGAUGGgcGg -3'
miRNA:   3'- gcCAGC-UGUGGUCUUCuaCUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 77303 0.72 0.963637
Target:  5'- aGGUUGugGgCCAu--GAUGAUGGAGGg -3'
miRNA:   3'- gCCAGCugU-GGUcuuCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 86315 0.71 0.966893
Target:  5'- aGGUUGGcCGCCAGcaccuGGAUGcUGGAGGu -3'
miRNA:   3'- gCCAGCU-GUGGUCu----UCUACuACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 160448 0.71 0.972778
Target:  5'- aGGcgcgaCGGCACggCAGAGGAUGAugUGGGAGg -3'
miRNA:   3'- gCCa----GCUGUG--GUCUUCUACU--ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 168096 0.71 0.973858
Target:  5'- cCGGUCGgaugcccuccaacacGCGCCcGggGuccUGGUGGAAGa -3'
miRNA:   3'- -GCCAGC---------------UGUGGuCuuCu--ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 13846 0.71 0.977867
Target:  5'- uGGaaugUGACgACCGGAGGGgagGAUGGggGu -3'
miRNA:   3'- gCCa---GCUG-UGGUCUUCUa--CUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 177951 0.71 0.977867
Target:  5'- cCGGUCGGUACCGGGAGG-GAUGucuGAGGc -3'
miRNA:   3'- -GCCAGCUGUGGUCUUCUaCUAC---CUUC- -5'
14493 5' -50.3 NC_003521.1 + 121025 0.7 0.980131
Target:  5'- cCGuGUCGccccgcugGCGCCGGAAGGUGGaccgcagccUGGAGGc -3'
miRNA:   3'- -GC-CAGC--------UGUGGUCUUCUACU---------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 119802 0.7 0.980131
Target:  5'- aGGUCGGCGCCGccGAGGAggucUGGAGc -3'
miRNA:   3'- gCCAGCUGUGGU--CUUCUacu-ACCUUc -5'
14493 5' -50.3 NC_003521.1 + 7829 0.7 0.982217
Target:  5'- aGGccaucCGGCGCCAGAAGAcGA-GGggGu -3'
miRNA:   3'- gCCa----GCUGUGGUCUUCUaCUaCCuuC- -5'
14493 5' -50.3 NC_003521.1 + 44985 0.7 0.984134
Target:  5'- ---cUGACGCCAGAGGcgGGgagGGAGGa -3'
miRNA:   3'- gccaGCUGUGGUCUUCuaCUa--CCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.