miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 193301 0.66 0.999528
Target:  5'- gGaGUCGGCGC--GggGGUGGUGGGc- -3'
miRNA:   3'- gC-CAGCUGUGguCuuCUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 33952 0.69 0.993235
Target:  5'- uCGGUUGugAaaacuccguagaccCCAGggGAUGccgGGAAGu -3'
miRNA:   3'- -GCCAGCugU--------------GGUCuuCUACua-CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 174462 0.68 0.995143
Target:  5'- uGGgcgUGGCACUugaccuccucGGGAGAacacUGAUGGAAGg -3'
miRNA:   3'- gCCa--GCUGUGG----------UCUUCU----ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 136254 0.68 0.996423
Target:  5'- cCGGcCGcuACGCCgacgugauucAGGAGGUGGUGGAGc -3'
miRNA:   3'- -GCCaGC--UGUGG----------UCUUCUACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 82824 0.67 0.998161
Target:  5'- aGGagGGCACCGGcGGcacaGGUGGAGGu -3'
miRNA:   3'- gCCagCUGUGGUCuUCua--CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 98836 0.67 0.998462
Target:  5'- aGGU-GACgGCgAGGAGGUGAUGGuGGu -3'
miRNA:   3'- gCCAgCUG-UGgUCUUCUACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 168670 0.67 0.998719
Target:  5'- ---aCGGCGCCGGAGGucccUGGUGGcAGg -3'
miRNA:   3'- gccaGCUGUGGUCUUCu---ACUACCuUC- -5'
14493 5' -50.3 NC_003521.1 + 70285 0.66 0.99894
Target:  5'- aGGUCGGCGCC-GAAGAgaaagcGGUGcAGGu -3'
miRNA:   3'- gCCAGCUGUGGuCUUCUa-----CUACcUUC- -5'
14493 5' -50.3 NC_003521.1 + 47803 0.66 0.999528
Target:  5'- uCGcGUCGACGCCAGAaagAGAccAUGcaGAAGa -3'
miRNA:   3'- -GC-CAGCUGUGGUCU---UCUacUAC--CUUC- -5'
14493 5' -50.3 NC_003521.1 + 97543 0.69 0.991472
Target:  5'- aCGGcgCGAgaacgagaaGCCAGcccAGAUGAUGGAGGa -3'
miRNA:   3'- -GCCa-GCUg--------UGGUCu--UCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 170176 0.69 0.990276
Target:  5'- uGGUCGACuuCGGAGcGGUGGugccggUGGAGGu -3'
miRNA:   3'- gCCAGCUGugGUCUU-CUACU------ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 13846 0.71 0.977867
Target:  5'- uGGaaugUGACgACCGGAGGGgagGAUGGggGu -3'
miRNA:   3'- gCCa---GCUG-UGGUCUUCUa--CUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 148351 0.8 0.662051
Target:  5'- aGGUCaGCACCAuGAAGAcGAUGGAGGc -3'
miRNA:   3'- gCCAGcUGUGGU-CUUCUaCUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 125174 0.76 0.833571
Target:  5'- uGGUCGAaggugCAGAAGAUGGUGGAc- -3'
miRNA:   3'- gCCAGCUgug--GUCUUCUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 193265 0.76 0.849856
Target:  5'- aCGGUCGGCugCGGAgcGGGUGccGGGAc -3'
miRNA:   3'- -GCCAGCUGugGUCU--UCUACuaCCUUc -5'
14493 5' -50.3 NC_003521.1 + 118671 0.75 0.865347
Target:  5'- gGGUCGGCuuCGGGAGGcggcgguaccgcUGGUGGAGGg -3'
miRNA:   3'- gCCAGCUGugGUCUUCU------------ACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 33849 0.73 0.934509
Target:  5'- gCGGUCGACGauagaGGGAGAUaGAgagGGAAGg -3'
miRNA:   3'- -GCCAGCUGUgg---UCUUCUA-CUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 77303 0.72 0.963637
Target:  5'- aGGUUGugGgCCAu--GAUGAUGGAGGg -3'
miRNA:   3'- gCCAGCugU-GGUcuuCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 160448 0.71 0.972778
Target:  5'- aGGcgcgaCGGCACggCAGAGGAUGAugUGGGAGg -3'
miRNA:   3'- gCCa----GCUGUG--GUCUUCUACU--ACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 168096 0.71 0.973858
Target:  5'- cCGGUCGgaugcccuccaacacGCGCCcGggGuccUGGUGGAAGa -3'
miRNA:   3'- -GCCAGC---------------UGUGGuCuuCu--ACUACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.