miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 5' -50.3 NC_003521.1 + 6835 0.69 0.993513
Target:  5'- aGGagGGCGCCgAGGAGGUuguaGUGGGAGg -3'
miRNA:   3'- gCCagCUGUGG-UCUUCUAc---UACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 7829 0.7 0.982217
Target:  5'- aGGccaucCGGCGCCAGAAGAcGA-GGggGu -3'
miRNA:   3'- gCCa----GCUGUGGUCUUCUaCUaCCuuC- -5'
14493 5' -50.3 NC_003521.1 + 13846 0.71 0.977867
Target:  5'- uGGaaugUGACgACCGGAGGGgagGAUGGggGu -3'
miRNA:   3'- gCCa---GCUG-UGGUCUUCUa--CUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 28473 0.66 0.999528
Target:  5'- gCGGU--GCACCAGcggguGGUGAUGGGc- -3'
miRNA:   3'- -GCCAgcUGUGGUCuu---CUACUACCUuc -5'
14493 5' -50.3 NC_003521.1 + 30094 0.67 0.998719
Target:  5'- aCGGccuaCGAUuCCGGGAcGGUGAUGGGAc -3'
miRNA:   3'- -GCCa---GCUGuGGUCUU-CUACUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 33849 0.73 0.934509
Target:  5'- gCGGUCGACGauagaGGGAGAUaGAgagGGAAGg -3'
miRNA:   3'- -GCCAGCUGUgg---UCUUCUA-CUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 33952 0.69 0.993235
Target:  5'- uCGGUUGugAaaacuccguagaccCCAGggGAUGccgGGAAGu -3'
miRNA:   3'- -GCCAGCugU--------------GGUCuuCUACua-CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 37899 0.72 0.960162
Target:  5'- -cGUCGuACAUCGGAAGcgGAUGGgcGg -3'
miRNA:   3'- gcCAGC-UGUGGUCUUCuaCUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 44985 0.7 0.984134
Target:  5'- ---cUGACGCCAGAGGcgGGgagGGAGGa -3'
miRNA:   3'- gccaGCUGUGGUCUUCuaCUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 47803 0.66 0.999528
Target:  5'- uCGcGUCGACGCCAGAaagAGAccAUGcaGAAGa -3'
miRNA:   3'- -GC-CAGCUGUGGUCU---UCUacUAC--CUUC- -5'
14493 5' -50.3 NC_003521.1 + 48704 0.69 0.993513
Target:  5'- aCGGagcCGACgagGCCGGGAGA-GGUGGAGa -3'
miRNA:   3'- -GCCa--GCUG---UGGUCUUCUaCUACCUUc -5'
14493 5' -50.3 NC_003521.1 + 66883 0.66 0.999507
Target:  5'- uGGcCGAgACCAGugacgaggaggcAGAUGAgggGGAGGa -3'
miRNA:   3'- gCCaGCUgUGGUCu-----------UCUACUa--CCUUC- -5'
14493 5' -50.3 NC_003521.1 + 68390 0.66 0.99962
Target:  5'- aGGUgGACGCCGuGAGAUGccGGcuGg -3'
miRNA:   3'- gCCAgCUGUGGUcUUCUACuaCCuuC- -5'
14493 5' -50.3 NC_003521.1 + 70285 0.66 0.99894
Target:  5'- aGGUCGGCGCC-GAAGAgaaagcGGUGcAGGu -3'
miRNA:   3'- gCCAGCUGUGGuCUUCUa-----CUACcUUC- -5'
14493 5' -50.3 NC_003521.1 + 73509 0.67 0.998161
Target:  5'- --cUCGAC-CCGGAGGAugUGGUGGgcGa -3'
miRNA:   3'- gccAGCUGuGGUCUUCU--ACUACCuuC- -5'
14493 5' -50.3 NC_003521.1 + 77029 0.68 0.995823
Target:  5'- gCGGUUGAgGCCGGc-GGUGGUGGc-- -3'
miRNA:   3'- -GCCAGCUgUGGUCuuCUACUACCuuc -5'
14493 5' -50.3 NC_003521.1 + 77303 0.72 0.963637
Target:  5'- aGGUUGugGgCCAu--GAUGAUGGAGGg -3'
miRNA:   3'- gCCAGCugU-GGUcuuCUACUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 82824 0.67 0.998161
Target:  5'- aGGagGGCACCGGcGGcacaGGUGGAGGu -3'
miRNA:   3'- gCCagCUGUGGUCuUCua--CUACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 86315 0.71 0.966893
Target:  5'- aGGUUGGcCGCCAGcaccuGGAUGcUGGAGGu -3'
miRNA:   3'- gCCAGCU-GUGGUCu----UCUACuACCUUC- -5'
14493 5' -50.3 NC_003521.1 + 89701 0.79 0.692611
Target:  5'- aCGGagGACAgCAGAGGAgagcgGGUGGAAGa -3'
miRNA:   3'- -GCCagCUGUgGUCUUCUa----CUACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.