miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 3' -51.1 NC_003521.1 + 138554 1.11 0.009756
Target:  5'- cGCUUCAACCACGUCGUCAGCAGCAUGu -3'
miRNA:   3'- -CGAAGUUGGUGCAGCAGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 221093 0.8 0.559887
Target:  5'- cGCcgUCAccGCCACGcUgGUCAGCAGCGUGu -3'
miRNA:   3'- -CGa-AGU--UGGUGC-AgCAGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 71847 0.78 0.652207
Target:  5'- cGCgacCGACCGCGUCGgcgaCAGCAGCGg- -3'
miRNA:   3'- -CGaa-GUUGGUGCAGCa---GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 44503 0.78 0.672749
Target:  5'- aGCUgCAGCCGcCGUCGUCAgGCGGCGc- -3'
miRNA:   3'- -CGAaGUUGGU-GCAGCAGU-CGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 130117 0.78 0.693156
Target:  5'- uCUUCuGCCccuGCGUCGUCGGCGGCGc- -3'
miRNA:   3'- cGAAGuUGG---UGCAGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 124444 0.77 0.733277
Target:  5'- -gUUCcACCACGUCGcgCGGCAGCAg- -3'
miRNA:   3'- cgAAGuUGGUGCAGCa-GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 176244 0.76 0.751872
Target:  5'- cGCUUC-ACCAUGUCGUCGaagaugcGCAGgAUGg -3'
miRNA:   3'- -CGAAGuUGGUGCAGCAGU-------CGUCgUAC- -5'
14499 3' -51.1 NC_003521.1 + 53151 0.75 0.808647
Target:  5'- uCUUgAACCACGUCGgggaCGGCGGCGa- -3'
miRNA:   3'- cGAAgUUGGUGCAGCa---GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 113815 0.75 0.834479
Target:  5'- gGCgucgUCGggcaccGCCACGUCGggCAGCGGCAg- -3'
miRNA:   3'- -CGa---AGU------UGGUGCAGCa-GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 163807 0.73 0.880922
Target:  5'- gGCUUCAcCgGCGUgGUCAaCGGCAUGa -3'
miRNA:   3'- -CGAAGUuGgUGCAgCAGUcGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 52444 0.73 0.88791
Target:  5'- uGCUaCAACCGCGUCGcagAGCAGCu-- -3'
miRNA:   3'- -CGAaGUUGGUGCAGCag-UCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 196518 0.72 0.912941
Target:  5'- uGCUUCAGCaccccguacguCACGUCGUCGGCGcccagguGCAc- -3'
miRNA:   3'- -CGAAGUUG-----------GUGCAGCAGUCGU-------CGUac -5'
14499 3' -51.1 NC_003521.1 + 142658 0.72 0.913536
Target:  5'- aGCggUCGGCgcaGCGcCGUCAGCAGCGa- -3'
miRNA:   3'- -CGa-AGUUGg--UGCaGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 102602 0.72 0.919346
Target:  5'- cGCU--GGCCACGUCGUCGucguGCAGCc-- -3'
miRNA:   3'- -CGAagUUGGUGCAGCAGU----CGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 27980 0.72 0.919346
Target:  5'- cGCUcaCGGCCACGg---CGGCAGCGUGa -3'
miRNA:   3'- -CGAa-GUUGGUGCagcaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 41971 0.72 0.92327
Target:  5'- aGCUguUCGACCGCcgcgccuucuuaagGUCG-CAGCAGCAa- -3'
miRNA:   3'- -CGA--AGUUGGUG--------------CAGCaGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 178200 0.72 0.930241
Target:  5'- gGCggC-GCCGaagcUCGUCAGCAGCAUGa -3'
miRNA:   3'- -CGaaGuUGGUgc--AGCAGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 131342 0.72 0.930241
Target:  5'- cGCUUCGcCCcgugcCGUCGcaagcucaUCGGCGGCAUGg -3'
miRNA:   3'- -CGAAGUuGGu----GCAGC--------AGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 124004 0.72 0.930241
Target:  5'- aGCUggaUCAggugguagguGCCGCGgugCGUCAGCGGCugcuUGg -3'
miRNA:   3'- -CGA---AGU----------UGGUGCa--GCAGUCGUCGu---AC- -5'
14499 3' -51.1 NC_003521.1 + 171651 0.72 0.932304
Target:  5'- aGCgc--GCCGCGgcgggcgucgggagCGUCGGCGGCAUGa -3'
miRNA:   3'- -CGaaguUGGUGCa-------------GCAGUCGUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.