miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 3' -51.1 NC_003521.1 + 220491 0.69 0.980588
Target:  5'- gGCUUCcACC-CGggagagCAGCAGCGUGg -3'
miRNA:   3'- -CGAAGuUGGuGCagca--GUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 117758 0.71 0.957158
Target:  5'- aGCUccUCGccGCCGcCGUCc-CAGCAGCAUGg -3'
miRNA:   3'- -CGA--AGU--UGGU-GCAGcaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 152052 0.71 0.960827
Target:  5'- uGCUUCAcCCGCagGUcCGUCAGCuucagcuGCGUGa -3'
miRNA:   3'- -CGAAGUuGGUG--CA-GCAGUCGu------CGUAC- -5'
14499 3' -51.1 NC_003521.1 + 218408 0.71 0.960827
Target:  5'- --cUCGGCCACGcCG-C-GCAGCAUGg -3'
miRNA:   3'- cgaAGUUGGUGCaGCaGuCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 142906 0.7 0.964272
Target:  5'- gGCgccaUCAGCCggcgACGUCGgcguugCAGCAGCGg- -3'
miRNA:   3'- -CGa---AGUUGG----UGCAGCa-----GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 222758 0.7 0.970515
Target:  5'- gGCUaCGGCCACGgCGUCGGUGGgGUc -3'
miRNA:   3'- -CGAaGUUGGUGCaGCAGUCGUCgUAc -5'
14499 3' -51.1 NC_003521.1 + 8266 0.7 0.973325
Target:  5'- -----cACCACGgaaacCGUCAGCAGCAa- -3'
miRNA:   3'- cgaaguUGGUGCa----GCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 153417 0.7 0.973325
Target:  5'- uGCgcCAcCgGCGUgGUCAGCAGCAg- -3'
miRNA:   3'- -CGaaGUuGgUGCAgCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 63359 0.7 0.975935
Target:  5'- ---aCGGCCGCGcagacCGUCAGCAGCu-- -3'
miRNA:   3'- cgaaGUUGGUGCa----GCAGUCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 202040 0.71 0.949133
Target:  5'- gGCgaaugCAGCCACGaCGUCuccuCAGCAUGg -3'
miRNA:   3'- -CGaa---GUUGGUGCaGCAGuc--GUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 43794 0.71 0.944769
Target:  5'- uUUUCGaaaggggggccGCCAUGUCG-CAGCAGCcgGg -3'
miRNA:   3'- cGAAGU-----------UGGUGCAGCaGUCGUCGuaC- -5'
14499 3' -51.1 NC_003521.1 + 142825 0.72 0.933826
Target:  5'- gGCUUCGgcaucggcaccaacACCAgCGUCcUCGGCAGCGUc -3'
miRNA:   3'- -CGAAGU--------------UGGU-GCAGcAGUCGUCGUAc -5'
14499 3' -51.1 NC_003521.1 + 221093 0.8 0.559887
Target:  5'- cGCcgUCAccGCCACGcUgGUCAGCAGCGUGu -3'
miRNA:   3'- -CGa-AGU--UGGUGC-AgCAGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 130117 0.78 0.693156
Target:  5'- uCUUCuGCCccuGCGUCGUCGGCGGCGc- -3'
miRNA:   3'- cGAAGuUGG---UGCAGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 142658 0.72 0.913536
Target:  5'- aGCggUCGGCgcaGCGcCGUCAGCAGCGa- -3'
miRNA:   3'- -CGa-AGUUGg--UGCaGCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 27980 0.72 0.919346
Target:  5'- cGCUcaCGGCCACGg---CGGCAGCGUGa -3'
miRNA:   3'- -CGAa-GUUGGUGCagcaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 102602 0.72 0.919346
Target:  5'- cGCU--GGCCACGUCGUCGucguGCAGCc-- -3'
miRNA:   3'- -CGAagUUGGUGCAGCAGU----CGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 41971 0.72 0.92327
Target:  5'- aGCUguUCGACCGCcgcgccuucuuaagGUCG-CAGCAGCAa- -3'
miRNA:   3'- -CGA--AGUUGGUG--------------CAGCaGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 124004 0.72 0.930241
Target:  5'- aGCUggaUCAggugguagguGCCGCGgugCGUCAGCGGCugcuUGg -3'
miRNA:   3'- -CGA---AGU----------UGGUGCa--GCAGUCGUCGu---AC- -5'
14499 3' -51.1 NC_003521.1 + 131342 0.72 0.930241
Target:  5'- cGCUUCGcCCcgugcCGUCGcaagcucaUCGGCGGCAUGg -3'
miRNA:   3'- -CGAAGUuGGu----GCAGC--------AGUCGUCGUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.