miRNA display CGI


Results 1 - 20 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 3' -51.1 NC_003521.1 + 1813 0.71 0.949133
Target:  5'- gGCgaaugCAGCCACGaCGUCuccuCAGCAUGg -3'
miRNA:   3'- -CGaa---GUUGGUGCaGCAGuc--GUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 8266 0.7 0.973325
Target:  5'- -----cACCACGgaaacCGUCAGCAGCAa- -3'
miRNA:   3'- cgaaguUGGUGCa----GCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 14927 0.67 0.996567
Target:  5'- cGCUUCGAgCGCGag--CGGCAGCGc- -3'
miRNA:   3'- -CGAAGUUgGUGCagcaGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 15695 0.67 0.996567
Target:  5'- ---gCAACCACGUCGacCAGguGCu-- -3'
miRNA:   3'- cgaaGUUGGUGCAGCa-GUCguCGuac -5'
14499 3' -51.1 NC_003521.1 + 16582 0.67 0.996567
Target:  5'- aUUUCA-CCAUGuUCGaCAGCGGUGUGg -3'
miRNA:   3'- cGAAGUuGGUGC-AGCaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 18459 0.7 0.973325
Target:  5'- cGCUUCGACCGCGggcugCG-CGGCgAGUGUc -3'
miRNA:   3'- -CGAAGUUGGUGCa----GCaGUCG-UCGUAc -5'
14499 3' -51.1 NC_003521.1 + 27980 0.72 0.919346
Target:  5'- cGCUcaCGGCCACGg---CGGCAGCGUGa -3'
miRNA:   3'- -CGAa-GUUGGUGCagcaGUCGUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 30285 0.66 0.998538
Target:  5'- gGCgcgcuCCACGUCGUCgaAGUAGCu-- -3'
miRNA:   3'- -CGaaguuGGUGCAGCAG--UCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 33860 0.7 0.970515
Target:  5'- cGCUUCGuggaacGCCACGggcucaucgcCGUCAGCAucuaccuguucuGCAUGg -3'
miRNA:   3'- -CGAAGU------UGGUGCa---------GCAGUCGU------------CGUAC- -5'
14499 3' -51.1 NC_003521.1 + 36523 0.68 0.992791
Target:  5'- uGCggUCAcCCGCcgGUCGUCGGCAuGCcgGu -3'
miRNA:   3'- -CGa-AGUuGGUG--CAGCAGUCGU-CGuaC- -5'
14499 3' -51.1 NC_003521.1 + 36953 0.66 0.998248
Target:  5'- ---cCGACgCugGUCGUC-GCAGCGg- -3'
miRNA:   3'- cgaaGUUG-GugCAGCAGuCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 41971 0.72 0.92327
Target:  5'- aGCUguUCGACCGCcgcgccuucuuaagGUCG-CAGCAGCAa- -3'
miRNA:   3'- -CGA--AGUUGGUG--------------CAGCaGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 43794 0.71 0.944769
Target:  5'- uUUUCGaaaggggggccGCCAUGUCG-CAGCAGCcgGg -3'
miRNA:   3'- cGAAGU-----------UGGUGCAGCaGUCGUCGuaC- -5'
14499 3' -51.1 NC_003521.1 + 44139 0.67 0.996567
Target:  5'- uGCUccUCcuCCGacgcCGUCGUCgAGCAGCAg- -3'
miRNA:   3'- -CGA--AGuuGGU----GCAGCAG-UCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 44503 0.78 0.672749
Target:  5'- aGCUgCAGCCGcCGUCGUCAgGCGGCGc- -3'
miRNA:   3'- -CGAaGUUGGU-GCAGCAGU-CGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 46628 0.68 0.991738
Target:  5'- --cUCAGCCagGCGguagacggCGUCGGCGGCGg- -3'
miRNA:   3'- cgaAGUUGG--UGCa-------GCAGUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 48307 0.66 0.998511
Target:  5'- --gUCuuCgACGUCGUCAGauucgagcaguacCAGCGUGg -3'
miRNA:   3'- cgaAGuuGgUGCAGCAGUC-------------GUCGUAC- -5'
14499 3' -51.1 NC_003521.1 + 52444 0.73 0.88791
Target:  5'- uGCUaCAACCGCGUCGcagAGCAGCu-- -3'
miRNA:   3'- -CGAaGUUGGUGCAGCag-UCGUCGuac -5'
14499 3' -51.1 NC_003521.1 + 53151 0.75 0.808647
Target:  5'- uCUUgAACCACGUCGgggaCGGCGGCGa- -3'
miRNA:   3'- cGAAgUUGGUGCAGCa---GUCGUCGUac -5'
14499 3' -51.1 NC_003521.1 + 53506 0.69 0.984533
Target:  5'- cGCUgcuGCgGCGUCG-CAGCGGCcgAUGg -3'
miRNA:   3'- -CGAaguUGgUGCAGCaGUCGUCG--UAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.