miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 197865 0.71 0.87847
Target:  5'- cGGCGggucgcgCUCGCUGGGCugCAg--GCGGc -3'
miRNA:   3'- -CCGUa------GAGCGGCCUGugGUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 134155 0.71 0.885317
Target:  5'- uGCAUCUCGUCgcacagguaGGugGCCAUGaugACGGc -3'
miRNA:   3'- cCGUAGAGCGG---------CCugUGGUACa--UGCU- -5'
14499 5' -54 NC_003521.1 + 113546 0.71 0.891951
Target:  5'- cGGCGUgUCGgacgugccgcgcCUGGGCGCCAUGgacgccgACGAg -3'
miRNA:   3'- -CCGUAgAGC------------GGCCUGUGGUACa------UGCU- -5'
14499 5' -54 NC_003521.1 + 86358 0.7 0.898368
Target:  5'- cGGCGg--UGCCGGugACCAacagcGUGCGGa -3'
miRNA:   3'- -CCGUagaGCGGCCugUGGUa----CAUGCU- -5'
14499 5' -54 NC_003521.1 + 201701 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 1474 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 39125 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 108432 0.7 0.910538
Target:  5'- aGCGUCU-GCCGGAUgACCucgcggGUGUGCGGc -3'
miRNA:   3'- cCGUAGAgCGGCCUG-UGG------UACAUGCU- -5'
14499 5' -54 NC_003521.1 + 239353 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 209672 0.7 0.916287
Target:  5'- uGCAUCUCGCUGcGCAUCAaGcGCGAg -3'
miRNA:   3'- cCGUAGAGCGGCcUGUGGUaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 119105 0.7 0.921809
Target:  5'- cGGCAgCUCGCCGGGCgACUGggGU-CGGa -3'
miRNA:   3'- -CCGUaGAGCGGCCUG-UGGUa-CAuGCU- -5'
14499 5' -54 NC_003521.1 + 173656 0.7 0.921809
Target:  5'- gGGCggCUgCGCgGGAC-CCAgggGUACGGa -3'
miRNA:   3'- -CCGuaGA-GCGgCCUGuGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 154814 0.69 0.932172
Target:  5'- aGGC--CUCGCUGGACGaugucuCCGaguUGUGCGAg -3'
miRNA:   3'- -CCGuaGAGCGGCCUGU------GGU---ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 87927 0.69 0.937013
Target:  5'- uGGCcgCcgCGCCGGGCAugcucuUCAUGgACGAg -3'
miRNA:   3'- -CCGuaGa-GCGGCCUGU------GGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 192280 0.69 0.937013
Target:  5'- cGGCGUCUccaCGCCGuucgucGGCACCGUccGCGGu -3'
miRNA:   3'- -CCGUAGA---GCGGC------CUGUGGUAcaUGCU- -5'
14499 5' -54 NC_003521.1 + 224410 0.69 0.941627
Target:  5'- cGGUAcacCUCGCCGGccaggcGCugCGUGguggGCGAg -3'
miRNA:   3'- -CCGUa--GAGCGGCC------UGugGUACa---UGCU- -5'
14499 5' -54 NC_003521.1 + 78214 0.69 0.941627
Target:  5'- cGGCG-CUCGUCGGAgGCUGUcGaGCGAg -3'
miRNA:   3'- -CCGUaGAGCGGCCUgUGGUA-CaUGCU- -5'
14499 5' -54 NC_003521.1 + 151861 0.69 0.945587
Target:  5'- gGGCGcugcagaUCagUCGCCGGGCGCUGUGcUGCa- -3'
miRNA:   3'- -CCGU-------AG--AGCGGCCUGUGGUAC-AUGcu -5'
14499 5' -54 NC_003521.1 + 120482 0.69 0.946016
Target:  5'- aGGUGUCUcCGCCGaGAgGCgCGUGUGgGGg -3'
miRNA:   3'- -CCGUAGA-GCGGC-CUgUG-GUACAUgCU- -5'
14499 5' -54 NC_003521.1 + 177741 0.69 0.946016
Target:  5'- gGGCAgcgCGCCGG-CGCagcUGUACGGg -3'
miRNA:   3'- -CCGUagaGCGGCCuGUGgu-ACAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.