miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 138589 1.12 0.005218
Target:  5'- cGGCAUCUCGCCGGACACCAUGUACGAg -3'
miRNA:   3'- -CCGUAGAGCGGCCUGUGGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 110638 0.9 0.114773
Target:  5'- cGGCAUCUCGCCGGGCGCCGgcacgGUcACGGc -3'
miRNA:   3'- -CCGUAGAGCGGCCUGUGGUa----CA-UGCU- -5'
14499 5' -54 NC_003521.1 + 145298 0.83 0.296284
Target:  5'- cGGCGUCUCGCCGGGCAuCCA-GUuCGGc -3'
miRNA:   3'- -CCGUAGAGCGGCCUGU-GGUaCAuGCU- -5'
14499 5' -54 NC_003521.1 + 25976 0.77 0.5969
Target:  5'- gGGCAcCUCGUCGGGCACgGUG-AUGAa -3'
miRNA:   3'- -CCGUaGAGCGGCCUGUGgUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 156182 0.76 0.616822
Target:  5'- cGGCAUCUCGCCGGugGCgCGUcaggaagccuacGU-CGAa -3'
miRNA:   3'- -CCGUAGAGCGGCCugUG-GUA------------CAuGCU- -5'
14499 5' -54 NC_003521.1 + 185214 0.75 0.696355
Target:  5'- gGGCcg--CGCgGGACugCGUGUACGAc -3'
miRNA:   3'- -CCGuagaGCGgCCUGugGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 13191 0.74 0.725557
Target:  5'- aGGCGUgC-CGCuCGGGcCGCCGUGUugGAg -3'
miRNA:   3'- -CCGUA-GaGCG-GCCU-GUGGUACAugCU- -5'
14499 5' -54 NC_003521.1 + 166632 0.74 0.735149
Target:  5'- cGGCGUCgggccgcgCGCCGGGCGCCGcg-GCGc -3'
miRNA:   3'- -CCGUAGa-------GCGGCCUGUGGUacaUGCu -5'
14499 5' -54 NC_003521.1 + 75987 0.74 0.744656
Target:  5'- cGGCc-CUCGCCGGGCGCCGUcaGCa- -3'
miRNA:   3'- -CCGuaGAGCGGCCUGUGGUAcaUGcu -5'
14499 5' -54 NC_003521.1 + 164754 0.74 0.76338
Target:  5'- gGGCAUCgcggUCGCCGGGCgaACCAUaGUgacGCGGc -3'
miRNA:   3'- -CCGUAG----AGCGGCCUG--UGGUA-CA---UGCU- -5'
14499 5' -54 NC_003521.1 + 15717 0.73 0.77258
Target:  5'- aGCAUgUCGCaaucACACCGUGUACGAu -3'
miRNA:   3'- cCGUAgAGCGgcc-UGUGGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 137027 0.73 0.77258
Target:  5'- cGGuCAUCUCGCCGGAgCACgGcg-GCGAg -3'
miRNA:   3'- -CC-GUAGAGCGGCCU-GUGgUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 185718 0.73 0.781661
Target:  5'- cGCGUCUCGCCGGGugcggaggugauCGCCGagcggGUGCGc -3'
miRNA:   3'- cCGUAGAGCGGCCU------------GUGGUa----CAUGCu -5'
14499 5' -54 NC_003521.1 + 20290 0.73 0.790614
Target:  5'- cGGUggAUCUCGCCGG-CGCCAUGcaGCa- -3'
miRNA:   3'- -CCG--UAGAGCGGCCuGUGGUACa-UGcu -5'
14499 5' -54 NC_003521.1 + 27806 0.73 0.808104
Target:  5'- cGGCcggCUCGCCcGGCGCCAUgGUACa- -3'
miRNA:   3'- -CCGua-GAGCGGcCUGUGGUA-CAUGcu -5'
14499 5' -54 NC_003521.1 + 214619 0.73 0.808104
Target:  5'- -aCGUCUgGCCGGAUACC-UGUGCu- -3'
miRNA:   3'- ccGUAGAgCGGCCUGUGGuACAUGcu -5'
14499 5' -54 NC_003521.1 + 134755 0.72 0.833181
Target:  5'- aGGcCAUCUUuCCGGGCACCAUcgaggGCGAc -3'
miRNA:   3'- -CC-GUAGAGcGGCCUGUGGUAca---UGCU- -5'
14499 5' -54 NC_003521.1 + 59363 0.72 0.849042
Target:  5'- aGGCGgcgCgccagcCGCUGGACGCCGcgcagcacuUGUACGAc -3'
miRNA:   3'- -CCGUa--Ga-----GCGGCCUGUGGU---------ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 135013 0.72 0.856695
Target:  5'- -cCAUCUggcUGCCGGGCACCGUGgccUGCGu -3'
miRNA:   3'- ccGUAGA---GCGGCCUGUGGUAC---AUGCu -5'
14499 5' -54 NC_003521.1 + 122682 0.71 0.871414
Target:  5'- uGGCG--UCGCCGGugAUCAUGgGCGu -3'
miRNA:   3'- -CCGUagAGCGGCCugUGGUACaUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.