miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 156775 0.68 0.964682
Target:  5'- gGGCcUCUCGCUcgagaaGGugGCCGUGgacuuCGGg -3'
miRNA:   3'- -CCGuAGAGCGG------CCugUGGUACau---GCU- -5'
14499 5' -54 NC_003521.1 + 154814 0.69 0.932172
Target:  5'- aGGC--CUCGCUGGACGaugucuCCGaguUGUGCGAg -3'
miRNA:   3'- -CCGuaGAGCGGCCUGU------GGU---ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 87927 0.69 0.937013
Target:  5'- uGGCcgCcgCGCCGGGCAugcucuUCAUGgACGAg -3'
miRNA:   3'- -CCGuaGa-GCGGCCUGU------GGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 192280 0.69 0.937013
Target:  5'- cGGCGUCUccaCGCCGuucgucGGCACCGUccGCGGu -3'
miRNA:   3'- -CCGUAGA---GCGGC------CUGUGGUAcaUGCU- -5'
14499 5' -54 NC_003521.1 + 224410 0.69 0.941627
Target:  5'- cGGUAcacCUCGCCGGccaggcGCugCGUGguggGCGAg -3'
miRNA:   3'- -CCGUa--GAGCGGCC------UGugGUACa---UGCU- -5'
14499 5' -54 NC_003521.1 + 151861 0.69 0.945587
Target:  5'- gGGCGcugcagaUCagUCGCCGGGCGCUGUGcUGCa- -3'
miRNA:   3'- -CCGU-------AG--AGCGGCCUGUGGUAC-AUGcu -5'
14499 5' -54 NC_003521.1 + 120482 0.69 0.946016
Target:  5'- aGGUGUCUcCGCCGaGAgGCgCGUGUGgGGg -3'
miRNA:   3'- -CCGUAGA-GCGGC-CUgUG-GUACAUgCU- -5'
14499 5' -54 NC_003521.1 + 31372 0.69 0.950182
Target:  5'- uGCAcgUCGCCGGACAgCAUgcGUACa- -3'
miRNA:   3'- cCGUagAGCGGCCUGUgGUA--CAUGcu -5'
14499 5' -54 NC_003521.1 + 154672 0.68 0.964682
Target:  5'- cGGCAgCgagaCGCUGGAgGCUaccgcGUGUGCGAc -3'
miRNA:   3'- -CCGUaGa---GCGGCCUgUGG-----UACAUGCU- -5'
14499 5' -54 NC_003521.1 + 119105 0.7 0.921809
Target:  5'- cGGCAgCUCGCCGGGCgACUGggGU-CGGa -3'
miRNA:   3'- -CCGUaGAGCGGCCUG-UGGUa-CAuGCU- -5'
14499 5' -54 NC_003521.1 + 239353 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 201701 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 110638 0.9 0.114773
Target:  5'- cGGCAUCUCGCCGGGCGCCGgcacgGUcACGGc -3'
miRNA:   3'- -CCGUAGAGCGGCCUGUGGUa----CA-UGCU- -5'
14499 5' -54 NC_003521.1 + 145298 0.83 0.296284
Target:  5'- cGGCGUCUCGCCGGGCAuCCA-GUuCGGc -3'
miRNA:   3'- -CCGUAGAGCGGCCUGU-GGUaCAuGCU- -5'
14499 5' -54 NC_003521.1 + 25976 0.77 0.5969
Target:  5'- gGGCAcCUCGUCGGGCACgGUG-AUGAa -3'
miRNA:   3'- -CCGUaGAGCGGCCUGUGgUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 75987 0.74 0.744656
Target:  5'- cGGCc-CUCGCCGGGCGCCGUcaGCa- -3'
miRNA:   3'- -CCGuaGAGCGGCCUGUGGUAcaUGcu -5'
14499 5' -54 NC_003521.1 + 164754 0.74 0.76338
Target:  5'- gGGCAUCgcggUCGCCGGGCgaACCAUaGUgacGCGGc -3'
miRNA:   3'- -CCGUAG----AGCGGCCUG--UGGUA-CA---UGCU- -5'
14499 5' -54 NC_003521.1 + 15717 0.73 0.77258
Target:  5'- aGCAUgUCGCaaucACACCGUGUACGAu -3'
miRNA:   3'- cCGUAgAGCGgcc-UGUGGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 59363 0.72 0.849042
Target:  5'- aGGCGgcgCgccagcCGCUGGACGCCGcgcagcacuUGUACGAc -3'
miRNA:   3'- -CCGUa--Ga-----GCGGCCUGUGGU---------ACAUGCU- -5'
14499 5' -54 NC_003521.1 + 134155 0.71 0.885317
Target:  5'- uGCAUCUCGUCgcacagguaGGugGCCAUGaugACGGc -3'
miRNA:   3'- cCGUAGAGCGG---------CCugUGGUACa--UGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.