miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14499 5' -54 NC_003521.1 + 1474 0.7 0.904564
Target:  5'- gGGCAUCcCGCUGcaGACGCCcgG-ACGAc -3'
miRNA:   3'- -CCGUAGaGCGGC--CUGUGGuaCaUGCU- -5'
14499 5' -54 NC_003521.1 + 2698 0.67 0.970691
Target:  5'- -uCAUCUCcCCGGaACGCCAcucGUGCGGg -3'
miRNA:   3'- ccGUAGAGcGGCC-UGUGGUa--CAUGCU- -5'
14499 5' -54 NC_003521.1 + 13191 0.74 0.725557
Target:  5'- aGGCGUgC-CGCuCGGGcCGCCGUGUugGAg -3'
miRNA:   3'- -CCGUA-GaGCG-GCCU-GUGGUACAugCU- -5'
14499 5' -54 NC_003521.1 + 15717 0.73 0.77258
Target:  5'- aGCAUgUCGCaaucACACCGUGUACGAu -3'
miRNA:   3'- cCGUAgAGCGgcc-UGUGGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 17095 0.68 0.954128
Target:  5'- gGGCuucgacCUCGaggaGGACACCGUGUuCGAc -3'
miRNA:   3'- -CCGua----GAGCgg--CCUGUGGUACAuGCU- -5'
14499 5' -54 NC_003521.1 + 20290 0.73 0.790614
Target:  5'- cGGUggAUCUCGCCGG-CGCCAUGcaGCa- -3'
miRNA:   3'- -CCG--UAGAGCGGCCuGUGGUACa-UGcu -5'
14499 5' -54 NC_003521.1 + 24170 0.67 0.97041
Target:  5'- gGGCA-CUCggaaaggagcgaaGCCGGGCGgCAUGgGCGGa -3'
miRNA:   3'- -CCGUaGAG-------------CGGCCUGUgGUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 24847 0.66 0.990251
Target:  5'- gGGCAUCaucuUCGCCGGcCACCucucGCa- -3'
miRNA:   3'- -CCGUAG----AGCGGCCuGUGGuacaUGcu -5'
14499 5' -54 NC_003521.1 + 25976 0.77 0.5969
Target:  5'- gGGCAcCUCGUCGGGCACgGUG-AUGAa -3'
miRNA:   3'- -CCGUaGAGCGGCCUGUGgUACaUGCU- -5'
14499 5' -54 NC_003521.1 + 25978 0.68 0.954128
Target:  5'- aGGC-UCUCGCCGGGCAgCAa------ -3'
miRNA:   3'- -CCGuAGAGCGGCCUGUgGUacaugcu -5'
14499 5' -54 NC_003521.1 + 26299 0.68 0.954128
Target:  5'- gGGCAUCUUGgaGGGCACCGacUACa- -3'
miRNA:   3'- -CCGUAGAGCggCCUGUGGUacAUGcu -5'
14499 5' -54 NC_003521.1 + 27806 0.73 0.808104
Target:  5'- cGGCcggCUCGCCcGGCGCCAUgGUACa- -3'
miRNA:   3'- -CCGua-GAGCGGcCUGUGGUA-CAUGcu -5'
14499 5' -54 NC_003521.1 + 28324 0.68 0.96436
Target:  5'- aGGCcuacgugGUCUCGUCGG---CCAUGUGCGu -3'
miRNA:   3'- -CCG-------UAGAGCGGCCuguGGUACAUGCu -5'
14499 5' -54 NC_003521.1 + 31372 0.69 0.950182
Target:  5'- uGCAcgUCGCCGGACAgCAUgcGUACa- -3'
miRNA:   3'- cCGUagAGCGGCCUGUgGUA--CAUGcu -5'
14499 5' -54 NC_003521.1 + 37071 0.66 0.988964
Target:  5'- cGGCAgCU-GCUGGGCACCAUcuccaccucGUACu- -3'
miRNA:   3'- -CCGUaGAgCGGCCUGUGGUA---------CAUGcu -5'
14499 5' -54 NC_003521.1 + 39125 0.7 0.910538
Target:  5'- gGGCGUCUgcaGCgGGAUGcCCGUGUGCu- -3'
miRNA:   3'- -CCGUAGAg--CGgCCUGU-GGUACAUGcu -5'
14499 5' -54 NC_003521.1 + 44262 0.66 0.984124
Target:  5'- cGGCGUCaCGCCGGaggagaucagcguGCACC-UGggcgccgACGAc -3'
miRNA:   3'- -CCGUAGaGCGGCC-------------UGUGGuACa------UGCU- -5'
14499 5' -54 NC_003521.1 + 44737 0.66 0.987549
Target:  5'- cGCAUUUCgugcuGCUGGACGCCGag-ACGGa -3'
miRNA:   3'- cCGUAGAG-----CGGCCUGUGGUacaUGCU- -5'
14499 5' -54 NC_003521.1 + 53858 0.67 0.97593
Target:  5'- cGGCGUcCUCgGCCGG----CGUGUACGAg -3'
miRNA:   3'- -CCGUA-GAG-CGGCCugugGUACAUGCU- -5'
14499 5' -54 NC_003521.1 + 59363 0.72 0.849042
Target:  5'- aGGCGgcgCgccagcCGCUGGACGCCGcgcagcacuUGUACGAc -3'
miRNA:   3'- -CCGUa--Ga-----GCGGCCUGUGGU---------ACAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.