miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 126849 0.69 0.910538
Target:  5'- cUGCACCGcCAGgaACAGCUCg--CGg -3'
miRNA:   3'- cGCGUGGCaGUCgaUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 193310 0.69 0.910538
Target:  5'- aCGCugC-UCAGCUACGGCUgcAUCGc -3'
miRNA:   3'- cGCGugGcAGUCGAUGUCGGgaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 194628 0.68 0.916287
Target:  5'- aGCGCGCaCGacacCAGCaccgUGCAGCCC-AUCa -3'
miRNA:   3'- -CGCGUG-GCa---GUCG----AUGUCGGGaUAGc -5'
14503 3' -55.2 NC_003521.1 + 17421 0.68 0.916287
Target:  5'- cCGCGCCGg-GGCgccacACGGCCCgcGUCGg -3'
miRNA:   3'- cGCGUGGCagUCGa----UGUCGGGa-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 68803 0.68 0.916287
Target:  5'- uGCGCGCCGUCcggauAGacuUGCGGgCCCUggcacaGUCGg -3'
miRNA:   3'- -CGCGUGGCAG-----UCg--AUGUC-GGGA------UAGC- -5'
14503 3' -55.2 NC_003521.1 + 203558 0.68 0.918523
Target:  5'- cGUGCACCGUCAGCgagaagagguuaGGCUCguUCGc -3'
miRNA:   3'- -CGCGUGGCAGUCGaug---------UCGGGauAGC- -5'
14503 3' -55.2 NC_003521.1 + 157507 0.68 0.921809
Target:  5'- cUGCACCGaCcGCUACc-CCCUGUCGc -3'
miRNA:   3'- cGCGUGGCaGuCGAUGucGGGAUAGC- -5'
14503 3' -55.2 NC_003521.1 + 172480 0.68 0.921809
Target:  5'- gGUGCGCCGUCGGCgggAUAGgaaUCCUcGUCc -3'
miRNA:   3'- -CGCGUGGCAGUCGa--UGUC---GGGA-UAGc -5'
14503 3' -55.2 NC_003521.1 + 138798 0.68 0.921809
Target:  5'- uGCGCGCCGUggccCAGgUGCucaaccacGCCCUGUg- -3'
miRNA:   3'- -CGCGUGGCA----GUCgAUGu-------CGGGAUAgc -5'
14503 3' -55.2 NC_003521.1 + 184836 0.68 0.921809
Target:  5'- --aCGCCGUggacCGGCUGCGGCCCcugcacAUCGg -3'
miRNA:   3'- cgcGUGGCA----GUCGAUGUCGGGa-----UAGC- -5'
14503 3' -55.2 NC_003521.1 + 104196 0.68 0.926585
Target:  5'- cGCGC-CCGUgGccgauuacgugcuGCUGCAGCCCag-CGa -3'
miRNA:   3'- -CGCGuGGCAgU-------------CGAUGUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 116921 0.68 0.927105
Target:  5'- uCGCuCCGaCAGCUACGGCCUgcUgGg -3'
miRNA:   3'- cGCGuGGCaGUCGAUGUCGGGauAgC- -5'
14503 3' -55.2 NC_003521.1 + 129980 0.68 0.927105
Target:  5'- cGUGCACCGUC-GCUGCcgcuGCgCCgg-CGg -3'
miRNA:   3'- -CGCGUGGCAGuCGAUGu---CG-GGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 156394 0.68 0.927105
Target:  5'- aGCGCAucccCCGuUUGGCUGgGGUCCUuUCGg -3'
miRNA:   3'- -CGCGU----GGC-AGUCGAUgUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 195590 0.68 0.927105
Target:  5'- -gGC-CCGUCuGCcggGCGGCCCU-UCGa -3'
miRNA:   3'- cgCGuGGCAGuCGa--UGUCGGGAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 111248 0.68 0.927105
Target:  5'- gGCGCGgCG-CGGCggaGCAGCCaucGUCGg -3'
miRNA:   3'- -CGCGUgGCaGUCGa--UGUCGGga-UAGC- -5'
14503 3' -55.2 NC_003521.1 + 90130 0.68 0.927105
Target:  5'- cGC-CGCCGgcgCAGCaGCAGCCCa---- -3'
miRNA:   3'- -CGcGUGGCa--GUCGaUGUCGGGauagc -5'
14503 3' -55.2 NC_003521.1 + 164443 0.68 0.932172
Target:  5'- aGCGcCACCG-CGGCcGCGGCCgUcacgGUCGc -3'
miRNA:   3'- -CGC-GUGGCaGUCGaUGUCGGgA----UAGC- -5'
14503 3' -55.2 NC_003521.1 + 198220 0.68 0.932172
Target:  5'- cCGUACCGUCAcGCUGucGCgCUAUCa -3'
miRNA:   3'- cGCGUGGCAGU-CGAUguCGgGAUAGc -5'
14503 3' -55.2 NC_003521.1 + 91214 0.68 0.932172
Target:  5'- -aGCGCCGUUucgcgcaugagGGCgUGCAGCCC-GUUGa -3'
miRNA:   3'- cgCGUGGCAG-----------UCG-AUGUCGGGaUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.