miRNA display CGI


Results 21 - 40 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 73567 0.75 0.33666
Target:  5'- uGGCCGUGGUGCGGGCgC-UGGUCAUg -3'
miRNA:   3'- -UCGGCAUCGUGUCCGgGuACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 102497 0.75 0.343947
Target:  5'- cGCCGUcgcgcAGcCGCAGGUCCAUgucGGCCACg -3'
miRNA:   3'- uCGGCA-----UC-GUGUCCGGGUA---CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 166667 0.75 0.343947
Target:  5'- cGGCCaGcGGCACcuGGGcCCCGUGGCgCGCCa -3'
miRNA:   3'- -UCGG-CaUCGUG--UCC-GGGUACCG-GUGG- -5'
14516 5' -59.7 NC_003521.1 + 39539 0.75 0.351347
Target:  5'- gAGCU--GGCGCAGGUCgGUGGCC-CCg -3'
miRNA:   3'- -UCGGcaUCGUGUCCGGgUACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 239766 0.75 0.351347
Target:  5'- gAGCU--GGCGCAGGUCgGUGGCC-CCg -3'
miRNA:   3'- -UCGGcaUCGUGUCCGGgUACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 196975 0.75 0.358103
Target:  5'- cGGCCGgGGCGCcugugacGGGCCCGcGGCCGgCg -3'
miRNA:   3'- -UCGGCaUCGUG-------UCCGGGUaCCGGUgG- -5'
14516 5' -59.7 NC_003521.1 + 134990 0.75 0.366483
Target:  5'- cAGCCgGUAGCAgGGGCaggCCGUGGCguCGCCc -3'
miRNA:   3'- -UCGG-CAUCGUgUCCG---GGUACCG--GUGG- -5'
14516 5' -59.7 NC_003521.1 + 153046 0.75 0.366483
Target:  5'- gGGCCucAGCACcuGGCCC-UGGCCugCg -3'
miRNA:   3'- -UCGGcaUCGUGu-CCGGGuACCGGugG- -5'
14516 5' -59.7 NC_003521.1 + 138037 0.75 0.366483
Target:  5'- uGCCGgcGCACGGGgCUGUgGGUCGCCc -3'
miRNA:   3'- uCGGCauCGUGUCCgGGUA-CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 106105 0.75 0.37344
Target:  5'- aGGCCucgGGCACGGGCguggcggCCGUGGgCACCu -3'
miRNA:   3'- -UCGGca-UCGUGUCCG-------GGUACCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 72672 0.75 0.374218
Target:  5'- uGCCGcauacGcCGCAGG-CCGUGGCCACCu -3'
miRNA:   3'- uCGGCau---C-GUGUCCgGGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 151810 0.74 0.381273
Target:  5'- cGCCGUGGCGCcggugGGGCCCGcGGCauuucugUACCu -3'
miRNA:   3'- uCGGCAUCGUG-----UCCGGGUaCCG-------GUGG- -5'
14516 5' -59.7 NC_003521.1 + 153388 0.74 0.382063
Target:  5'- cGUCGUAGCGCAGGaUCUccucgugcagGUGcGCCACCg -3'
miRNA:   3'- uCGGCAUCGUGUCC-GGG----------UAC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 108697 0.74 0.390016
Target:  5'- uGCUGUAGUcgaACAGGCCgCGcUGcGCCGCCu -3'
miRNA:   3'- uCGGCAUCG---UGUCCGG-GU-AC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 151644 0.74 0.406244
Target:  5'- gAGCaCGUccAGCAgggcCAGGCCCAcGGCCcaGCCg -3'
miRNA:   3'- -UCG-GCA--UCGU----GUCCGGGUaCCGG--UGG- -5'
14516 5' -59.7 NC_003521.1 + 134680 0.74 0.426268
Target:  5'- aGGCCGUagaugaugaacugguGGCGguaGGuGCCCAcGGCCGCCa -3'
miRNA:   3'- -UCGGCA---------------UCGUg--UC-CGGGUaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 141201 0.73 0.431365
Target:  5'- uGGCCGUGGCGCugcgccgccGGGCgCugcaGGUCACCa -3'
miRNA:   3'- -UCGGCAUCGUG---------UCCGgGua--CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 222169 0.73 0.431365
Target:  5'- -cCCGUGGCcaGCAGGUCCGUgcGGCC-CCa -3'
miRNA:   3'- ucGGCAUCG--UGUCCGGGUA--CCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 91620 0.73 0.439939
Target:  5'- gGGCCuggGUGGCGUAGuCCuCGUGGCCGCCg -3'
miRNA:   3'- -UCGG---CAUCGUGUCcGG-GUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 119029 0.73 0.445129
Target:  5'- cGGCCG-AGCGCAaguaccgccaccuGCCCGUGGCCgacACCa -3'
miRNA:   3'- -UCGGCaUCGUGUc------------CGGGUACCGG---UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.