miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 147750 1.12 0.001324
Target:  5'- aAGCCGUAGCACAGGCCCAUGGCCACCa -3'
miRNA:   3'- -UCGGCAUCGUGUCCGGGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 71286 0.84 0.100527
Target:  5'- gGGCCGcGGCACGGGCCCcugGGgCACCa -3'
miRNA:   3'- -UCGGCaUCGUGUCCGGGua-CCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 129827 0.82 0.129051
Target:  5'- gGGCCGccugcuGCugGGGCCCGUGGCCguGCCc -3'
miRNA:   3'- -UCGGCau----CGugUCCGGGUACCGG--UGG- -5'
14516 5' -59.7 NC_003521.1 + 55844 0.79 0.195079
Target:  5'- aGGCCGgccuuGCACAGGUCCAcgcUGGCCcgcACCg -3'
miRNA:   3'- -UCGGCau---CGUGUCCGGGU---ACCGG---UGG- -5'
14516 5' -59.7 NC_003521.1 + 109603 0.79 0.206493
Target:  5'- cGGCCagcgAGCACAGGCCCGucucgaugaugaagaUGaGCCGCCg -3'
miRNA:   3'- -UCGGca--UCGUGUCCGGGU---------------AC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 184363 0.79 0.214419
Target:  5'- gGGCCGUGGCGCGGcGCCUcucggaccugGGCCACg -3'
miRNA:   3'- -UCGGCAUCGUGUC-CGGGua--------CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 122855 0.79 0.219505
Target:  5'- cGUCGUAGCGCuGGUgC-UGGCCGCCg -3'
miRNA:   3'- uCGGCAUCGUGuCCGgGuACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 101924 0.78 0.224693
Target:  5'- gAGCCGgcGUACucgccggugGGGUCCAcgUGGCCGCCg -3'
miRNA:   3'- -UCGGCauCGUG---------UCCGGGU--ACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 17016 0.78 0.229985
Target:  5'- uGGCgGcGGCGCAGGCCCGucgucUGGCgGCCc -3'
miRNA:   3'- -UCGgCaUCGUGUCCGGGU-----ACCGgUGG- -5'
14516 5' -59.7 NC_003521.1 + 172321 0.78 0.229985
Target:  5'- cGCCGcUGGCGCAGGCCUc-GGCCGuCCu -3'
miRNA:   3'- uCGGC-AUCGUGUCCGGGuaCCGGU-GG- -5'
14516 5' -59.7 NC_003521.1 + 208750 0.78 0.235382
Target:  5'- uGGCCGUGGcCACGGGCCaguaCGUGGUCugUa -3'
miRNA:   3'- -UCGGCAUC-GUGUCCGG----GUACCGGugG- -5'
14516 5' -59.7 NC_003521.1 + 210900 0.77 0.258037
Target:  5'- uGGCCGUcGC-CAGGCCCuugacGGCCACg -3'
miRNA:   3'- -UCGGCAuCGuGUCCGGGua---CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 120716 0.77 0.263973
Target:  5'- aGGuuGUGGCcCuGGaCCGUGGCCACCa -3'
miRNA:   3'- -UCggCAUCGuGuCCgGGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 226440 0.77 0.276176
Target:  5'- cGCCGUAGCGCGccagcucGUCCAgguugugGGCCACCa -3'
miRNA:   3'- uCGGCAUCGUGUc------CGGGUa------CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 203420 0.77 0.276176
Target:  5'- aGGCCGUcGCACaAGGCCCGggcgcccccGCCGCCu -3'
miRNA:   3'- -UCGGCAuCGUG-UCCGGGUac-------CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 197358 0.77 0.283077
Target:  5'- cGGCCGccGCGCuGGCCCGcugugagaguuccagGGCCGCCg -3'
miRNA:   3'- -UCGGCauCGUGuCCGGGUa--------------CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 185122 0.76 0.301925
Target:  5'- -aCCGUAGUACAGGCCgcccGCCACCg -3'
miRNA:   3'- ucGGCAUCGUGUCCGGguacCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 128023 0.76 0.308645
Target:  5'- cGGCCGUcccagAGCGCGuGCCCGUaGGCgGCCa -3'
miRNA:   3'- -UCGGCA-----UCGUGUcCGGGUA-CCGgUGG- -5'
14516 5' -59.7 NC_003521.1 + 223460 0.76 0.308645
Target:  5'- cGCCaGUAGCAacgagucucGGCCguUGGCCACCa -3'
miRNA:   3'- uCGG-CAUCGUgu-------CCGGguACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 56762 0.76 0.318243
Target:  5'- cGCCGcAGCuCAGGCUgcucauccacuugcaCAUGGCCGCCc -3'
miRNA:   3'- uCGGCaUCGuGUCCGG---------------GUACCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.