miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 222169 0.73 0.431365
Target:  5'- -cCCGUGGCcaGCAGGUCCGUgcGGCC-CCa -3'
miRNA:   3'- ucGGCAUCG--UGUCCGGGUA--CCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 73567 0.75 0.33666
Target:  5'- uGGCCGUGGUGCGGGCgC-UGGUCAUg -3'
miRNA:   3'- -UCGGCAUCGUGUCCGgGuACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 102497 0.75 0.343947
Target:  5'- cGCCGUcgcgcAGcCGCAGGUCCAUgucGGCCACg -3'
miRNA:   3'- uCGGCA-----UC-GUGUCCGGGUA---CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 239766 0.75 0.351347
Target:  5'- gAGCU--GGCGCAGGUCgGUGGCC-CCg -3'
miRNA:   3'- -UCGGcaUCGUGUCCGGgUACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 138037 0.75 0.366483
Target:  5'- uGCCGgcGCACGGGgCUGUgGGUCGCCc -3'
miRNA:   3'- uCGGCauCGUGUCCgGGUA-CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 134990 0.75 0.366483
Target:  5'- cAGCCgGUAGCAgGGGCaggCCGUGGCguCGCCc -3'
miRNA:   3'- -UCGG-CAUCGUgUCCG---GGUACCG--GUGG- -5'
14516 5' -59.7 NC_003521.1 + 153388 0.74 0.382063
Target:  5'- cGUCGUAGCGCAGGaUCUccucgugcagGUGcGCCACCg -3'
miRNA:   3'- uCGGCAUCGUGUCC-GGG----------UAC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 151644 0.74 0.406244
Target:  5'- gAGCaCGUccAGCAgggcCAGGCCCAcGGCCcaGCCg -3'
miRNA:   3'- -UCG-GCA--UCGU----GUCCGGGUaCCGG--UGG- -5'
14516 5' -59.7 NC_003521.1 + 134680 0.74 0.426268
Target:  5'- aGGCCGUagaugaugaacugguGGCGguaGGuGCCCAcGGCCGCCa -3'
miRNA:   3'- -UCGGCA---------------UCGUg--UC-CGGGUaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 56762 0.76 0.318243
Target:  5'- cGCCGcAGCuCAGGCUgcucauccacuugcaCAUGGCCGCCc -3'
miRNA:   3'- uCGGCaUCGuGUCCGG---------------GUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 185122 0.76 0.301925
Target:  5'- -aCCGUAGUACAGGCCgcccGCCACCg -3'
miRNA:   3'- ucGGCAUCGUGUCCGGguacCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 226440 0.77 0.276176
Target:  5'- cGCCGUAGCGCGccagcucGUCCAgguugugGGCCACCa -3'
miRNA:   3'- uCGGCAUCGUGUc------CGGGUa------CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 71286 0.84 0.100527
Target:  5'- gGGCCGcGGCACGGGCCCcugGGgCACCa -3'
miRNA:   3'- -UCGGCaUCGUGUCCGGGua-CCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 129827 0.82 0.129051
Target:  5'- gGGCCGccugcuGCugGGGCCCGUGGCCguGCCc -3'
miRNA:   3'- -UCGGCau----CGugUCCGGGUACCGG--UGG- -5'
14516 5' -59.7 NC_003521.1 + 55844 0.79 0.195079
Target:  5'- aGGCCGgccuuGCACAGGUCCAcgcUGGCCcgcACCg -3'
miRNA:   3'- -UCGGCau---CGUGUCCGGGU---ACCGG---UGG- -5'
14516 5' -59.7 NC_003521.1 + 109603 0.79 0.206493
Target:  5'- cGGCCagcgAGCACAGGCCCGucucgaugaugaagaUGaGCCGCCg -3'
miRNA:   3'- -UCGGca--UCGUGUCCGGGU---------------AC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 172321 0.78 0.229985
Target:  5'- cGCCGcUGGCGCAGGCCUc-GGCCGuCCu -3'
miRNA:   3'- uCGGC-AUCGUGUCCGGGuaCCGGU-GG- -5'
14516 5' -59.7 NC_003521.1 + 210900 0.77 0.258037
Target:  5'- uGGCCGUcGC-CAGGCCCuugacGGCCACg -3'
miRNA:   3'- -UCGGCAuCGuGUCCGGGua---CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 120716 0.77 0.263973
Target:  5'- aGGuuGUGGCcCuGGaCCGUGGCCACCa -3'
miRNA:   3'- -UCggCAUCGuGuCCgGGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 203420 0.77 0.276176
Target:  5'- aGGCCGUcGCACaAGGCCCGggcgcccccGCCGCCu -3'
miRNA:   3'- -UCGGCAuCGUG-UCCGGGUac-------CGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.