miRNA display CGI


Results 1 - 20 of 374 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 33 0.66 0.85268
Target:  5'- uGCCGUGGC-CGGGaUCgGUGaGUCACg -3'
miRNA:   3'- uCGGCAUCGuGUCC-GGgUAC-CGGUGg -5'
14516 5' -59.7 NC_003521.1 + 764 0.66 0.85193
Target:  5'- cGCCGgaGGCcaaGCAGGCgCCAUcggcggaGGaCCGCCc -3'
miRNA:   3'- uCGGCa-UCG---UGUCCG-GGUA-------CC-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 1334 0.69 0.656222
Target:  5'- cGGCUGUaucgguccaaccGGCugGGGCugaacgcgCCGcgGGCCACCg -3'
miRNA:   3'- -UCGGCA------------UCGugUCCG--------GGUa-CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 2530 0.68 0.751554
Target:  5'- -uCCGaGGUACuGGCCCuc-GCCGCCa -3'
miRNA:   3'- ucGGCaUCGUGuCCGGGuacCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 2611 0.66 0.82941
Target:  5'- cGCCGUGccgacGCcCAGGCUCuUGGCC-UCg -3'
miRNA:   3'- uCGGCAU-----CGuGUCCGGGuACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 4569 0.69 0.685353
Target:  5'- cGGCCGgGGCACAcgccGGCCUccGGUUugCu -3'
miRNA:   3'- -UCGGCaUCGUGU----CCGGGuaCCGGugG- -5'
14516 5' -59.7 NC_003521.1 + 6722 0.69 0.665959
Target:  5'- cGCCGUGGUGCAGGgCCugacgcaGCCAgCg -3'
miRNA:   3'- uCGGCAUCGUGUCCgGGuac----CGGUgG- -5'
14516 5' -59.7 NC_003521.1 + 12810 0.68 0.74232
Target:  5'- uGCCGaAG-ACGuGGCCaaccugGUGGCCACCu -3'
miRNA:   3'- uCGGCaUCgUGU-CCGGg-----UACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 13918 0.71 0.549445
Target:  5'- gGGCC---GCGgAGGCCgCGcUGGCCGCCg -3'
miRNA:   3'- -UCGGcauCGUgUCCGG-GU-ACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 14727 0.69 0.701714
Target:  5'- cGCCGUGGUaucuguugggcgugACGGGCC---GGCCGCg -3'
miRNA:   3'- uCGGCAUCG--------------UGUCCGGguaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 16513 0.67 0.813069
Target:  5'- -aCCGUGaCGgGGGCgUcUGGCCACCa -3'
miRNA:   3'- ucGGCAUcGUgUCCGgGuACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 17016 0.78 0.229985
Target:  5'- uGGCgGcGGCGCAGGCCCGucgucUGGCgGCCc -3'
miRNA:   3'- -UCGgCaUCGUGUCCGGGU-----ACCGgUGG- -5'
14516 5' -59.7 NC_003521.1 + 17141 0.66 0.837339
Target:  5'- uGCCGgcGCGCuucGCCCGacccucccUGGCCAa- -3'
miRNA:   3'- uCGGCauCGUGuc-CGGGU--------ACCGGUgg -5'
14516 5' -59.7 NC_003521.1 + 17356 0.69 0.694994
Target:  5'- gGGCCGUgacgccGGCGCGgcGGCCCAgacucgagagGGaCCGCUc -3'
miRNA:   3'- -UCGGCA------UCGUGU--CCGGGUa---------CC-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 17424 0.69 0.675673
Target:  5'- cGCCGgGGCGCcacacGGCCCGcgucgGGgCGCCg -3'
miRNA:   3'- uCGGCaUCGUGu----CCGGGUa----CCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 18489 0.66 0.845097
Target:  5'- cGCC-UGGaggaGCu-GCCCGUGuGCCACCa -3'
miRNA:   3'- uCGGcAUCg---UGucCGGGUAC-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 18702 0.66 0.82941
Target:  5'- uGGCCGgcGCGauccGG-CUGUGGCUGCCg -3'
miRNA:   3'- -UCGGCauCGUgu--CCgGGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 20300 0.68 0.723596
Target:  5'- cGCCGgcGCcauGCA-GCaCCAggaGGCCACCa -3'
miRNA:   3'- uCGGCauCG---UGUcCG-GGUa--CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 21145 0.69 0.708408
Target:  5'- -uCCGUccGCGCGGGCCCcccggggcuguuucgAUGGUCACUc -3'
miRNA:   3'- ucGGCAu-CGUGUCCGGG---------------UACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 21776 0.67 0.77865
Target:  5'- cGCCGUGGCguGCcuGUCCGUGGCgGugauCCa -3'
miRNA:   3'- uCGGCAUCG--UGucCGGGUACCGgU----GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.