miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 149234 0.65 0.859349
Target:  5'- aAGCUGcGGCGCGGcuacuacGCCUacgacGUGGCCAUg -3'
miRNA:   3'- -UCGGCaUCGUGUC-------CGGG-----UACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 37456 0.65 0.859349
Target:  5'- cGCUGUGggcucgcGCGCGGGCCacCGUGguGCCGCa -3'
miRNA:   3'- uCGGCAU-------CGUGUCCGG--GUAC--CGGUGg -5'
14516 5' -59.7 NC_003521.1 + 125789 0.66 0.82941
Target:  5'- cAGCCGgccuGCG-AGGCCCAgggguugugcgUGGCCGu- -3'
miRNA:   3'- -UCGGCau--CGUgUCCGGGU-----------ACCGGUgg -5'
14516 5' -59.7 NC_003521.1 + 127405 0.66 0.845097
Target:  5'- aGGCgGUGGUcguGCAGcGCguucaCGUaGGCCGCCa -3'
miRNA:   3'- -UCGgCAUCG---UGUC-CGg----GUA-CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 165661 0.66 0.82941
Target:  5'- cGCCGcgcGGCACcaugcguccAGGCauccCCAggucGGCCGCCg -3'
miRNA:   3'- uCGGCa--UCGUG---------UCCG----GGUa---CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 77448 0.66 0.837339
Target:  5'- uGCCGccGUugGuGCCCGUGacacuGCCGCCg -3'
miRNA:   3'- uCGGCauCGugUcCGGGUAC-----CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 35471 0.66 0.837339
Target:  5'- aGGUCGU-GCAC-GGCgCAgcuGCCGCCg -3'
miRNA:   3'- -UCGGCAuCGUGuCCGgGUac-CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 218874 0.66 0.82941
Target:  5'- cGCCGcgcucgcccacUAGCucCA-GCCCGaGGCCGCCc -3'
miRNA:   3'- uCGGC-----------AUCGu-GUcCGGGUaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 65720 0.66 0.845097
Target:  5'- cGCCGcGGC---GGCCC-UGGCCGgCa -3'
miRNA:   3'- uCGGCaUCGuguCCGGGuACCGGUgG- -5'
14516 5' -59.7 NC_003521.1 + 235540 0.66 0.845097
Target:  5'- uGCCGgguuucgAGCACgucAGGCCCcuGUGGUacaacaACCc -3'
miRNA:   3'- uCGGCa------UCGUG---UCCGGG--UACCGg-----UGG- -5'
14516 5' -59.7 NC_003521.1 + 50220 0.66 0.845097
Target:  5'- gAGCgCGaAGguCAGGUCgCggGGCCACUc -3'
miRNA:   3'- -UCG-GCaUCguGUCCGG-GuaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 125898 0.66 0.82941
Target:  5'- cGCCcagcauGCACgAGGCCC--GGCCGCg -3'
miRNA:   3'- uCGGcau---CGUG-UCCGGGuaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 142941 0.66 0.828608
Target:  5'- cGGCgGUcagggucAGCGgGGGCCCcUGGUCuCCc -3'
miRNA:   3'- -UCGgCA-------UCGUgUCCGGGuACCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 136766 0.66 0.842788
Target:  5'- gAGCUGcUGGCcuaccugcgcgacaGCGGGCUCAcGGUCACg -3'
miRNA:   3'- -UCGGC-AUCG--------------UGUCCGGGUaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 195943 0.66 0.845097
Target:  5'- uAGCCGUccugcgugGGcCACAGGCUC-UGGCaGCg -3'
miRNA:   3'- -UCGGCA--------UC-GUGUCCGGGuACCGgUGg -5'
14516 5' -59.7 NC_003521.1 + 174145 0.66 0.85268
Target:  5'- cGCCGacAGCACgugacgcuccaGGGCCUgcaGGCCGCg -3'
miRNA:   3'- uCGGCa-UCGUG-----------UCCGGGua-CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 17141 0.66 0.837339
Target:  5'- uGCCGgcGCGCuucGCCCGacccucccUGGCCAa- -3'
miRNA:   3'- uCGGCauCGUGuc-CGGGU--------ACCGGUgg -5'
14516 5' -59.7 NC_003521.1 + 50264 0.66 0.845097
Target:  5'- cGCCGUacugccgcugcAGC-CGGGUCCGccgcUGcuGCCGCCg -3'
miRNA:   3'- uCGGCA-----------UCGuGUCCGGGU----AC--CGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 43473 0.66 0.837339
Target:  5'- gGGCC--AGCGCGGcGgCCGugcUGGCCGCg -3'
miRNA:   3'- -UCGGcaUCGUGUC-CgGGU---ACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 67034 0.66 0.821318
Target:  5'- aGGCaGUG--ACGGuGUCCGUGGCCAUCg -3'
miRNA:   3'- -UCGgCAUcgUGUC-CGGGUACCGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.