miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 90044 0.74 0.381879
Target:  5'- -gACGG-CCUCCAGCuccgggacgccgacGCGCuCGCGGAg -3'
miRNA:   3'- caUGCCuGGAGGUCG--------------UGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 91195 0.68 0.677052
Target:  5'- -aGCGGuACCgCgGGCGCGUCGUGGGc -3'
miRNA:   3'- caUGCC-UGGaGgUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 91522 0.67 0.76525
Target:  5'- -gGCGGccgcgucgucGCgCUCCAGCACGUacuugugggcgccgaCGCGGAa -3'
miRNA:   3'- caUGCC----------UG-GAGGUCGUGCG---------------GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 91792 0.67 0.770629
Target:  5'- -cACGG-CCUCgAGaaucucCACGCCGUGGGg -3'
miRNA:   3'- caUGCCuGGAGgUC------GUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 95832 0.66 0.821121
Target:  5'- -cGCGaGGCCUCgguGGCAUGCCGCuggcucaGGAUg -3'
miRNA:   3'- caUGC-CUGGAGg--UCGUGCGGCG-------CCUA- -5'
14520 5' -60.3 NC_003521.1 + 95919 0.69 0.647976
Target:  5'- --uCGG-CCaCCGGCAUGCCGUGGGc -3'
miRNA:   3'- cauGCCuGGaGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 103140 0.66 0.813732
Target:  5'- -gGCGGugCUgCAGCAC-CagGCGGAUc -3'
miRNA:   3'- caUGCCugGAgGUCGUGcGg-CGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 103467 0.67 0.779503
Target:  5'- -cGCGGAUgcgggagggcggCUCCAGCGgGCCcGCGuGAUa -3'
miRNA:   3'- caUGCCUG------------GAGGUCGUgCGG-CGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 104679 0.67 0.752554
Target:  5'- -cGCGGAgCUCgAGgGgGCCGUGGGc -3'
miRNA:   3'- caUGCCUgGAGgUCgUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 107445 0.66 0.796887
Target:  5'- -cGCGGACCgCC-GCGCuguGCCgGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGuCGUG---CGG-CGCCUa -5'
14520 5' -60.3 NC_003521.1 + 111173 0.73 0.40025
Target:  5'- -cGCGGccGCC-CCGGCgacgGCGCCGCGGAc -3'
miRNA:   3'- caUGCC--UGGaGGUCG----UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 111272 0.67 0.752554
Target:  5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3'
miRNA:   3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5'
14520 5' -60.3 NC_003521.1 + 111803 0.66 0.829982
Target:  5'- cUGCGGGugcCCUCUGGCgGCGCCaGCGaGAUc -3'
miRNA:   3'- cAUGCCU---GGAGGUCG-UGCGG-CGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 114719 0.72 0.46831
Target:  5'- -gACGaGAUCgaccgcuggaUCCGGCACGCCGUGGGg -3'
miRNA:   3'- caUGC-CUGG----------AGGUCGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 114924 0.69 0.667383
Target:  5'- cGgcCGGGCCUCguGCAUGCugggCGUGGAc -3'
miRNA:   3'- -CauGCCUGGAGguCGUGCG----GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 115413 0.74 0.368668
Target:  5'- -cACGG-CCUCCGGacucaGCGCCGCGGc- -3'
miRNA:   3'- caUGCCuGGAGGUCg----UGCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 115785 0.66 0.796887
Target:  5'- -cACGGACCa-CAcGCGCGgauacCCGCGGAUg -3'
miRNA:   3'- caUGCCUGGagGU-CGUGC-----GGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 116593 0.66 0.837866
Target:  5'- -cGCGGcCCUCCcuGCAaguCGCUGCGGc- -3'
miRNA:   3'- caUGCCuGGAGGu-CGU---GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 117068 0.66 0.837866
Target:  5'- -cGCGGAgCCggCGGuCACGCCGUGcGAUa -3'
miRNA:   3'- caUGCCU-GGagGUC-GUGCGGCGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 119352 0.69 0.657689
Target:  5'- gGUcCGG-CCUCCauGGaCACGCCGgGGAUg -3'
miRNA:   3'- -CAuGCCuGGAGG--UC-GUGCGGCgCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.