miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 198270 0.69 0.657689
Target:  5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3'
miRNA:   3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 128286 0.75 0.338838
Target:  5'- -cAUGGugCUgaCCAGCuCGCCGCGGAa -3'
miRNA:   3'- caUGCCugGA--GGUCGuGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 90044 0.74 0.381879
Target:  5'- -gACGG-CCUCCAGCuccgggacgccgacGCGCuCGCGGAg -3'
miRNA:   3'- caUGCCuGGAGGUCG--------------UGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 172042 0.73 0.442066
Target:  5'- -cGCaGGAUCUCUAGCGCGCUGaGGAUg -3'
miRNA:   3'- caUG-CCUGGAGGUCGUGCGGCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 87015 0.66 0.821935
Target:  5'- -aACGGGCgUgCugGGCACGCUGCGcGAg -3'
miRNA:   3'- caUGCCUGgAgG--UCGUGCGGCGC-CUa -5'
14520 5' -60.3 NC_003521.1 + 24889 0.66 0.813732
Target:  5'- gGUGCGcuACCUCac-CAUGCCGCGGGa -3'
miRNA:   3'- -CAUGCc-UGGAGgucGUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 128768 0.66 0.80538
Target:  5'- -cGCGGcguCCUCCAGCagGCGUCGCa--- -3'
miRNA:   3'- caUGCCu--GGAGGUCG--UGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 165935 0.66 0.796887
Target:  5'- gGUACuuGACCUCCAGguCGgggugcUCGCGGAa -3'
miRNA:   3'- -CAUGc-CUGGAGGUCguGC------GGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 184 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 91792 0.67 0.770629
Target:  5'- -cACGG-CCUCgAGaaucucCACGCCGUGGGg -3'
miRNA:   3'- caUGCCuGGAGgUC------GUGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 111272 0.67 0.752554
Target:  5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3'
miRNA:   3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5'
14520 5' -60.3 NC_003521.1 + 210592 0.68 0.721921
Target:  5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3'
miRNA:   3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5'
14520 5' -60.3 NC_003521.1 + 166544 0.68 0.686687
Target:  5'- aUGCGGAUguugCCGGCGCaCUGCGGAUc -3'
miRNA:   3'- cAUGCCUGga--GGUCGUGcGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 23970 0.69 0.618798
Target:  5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3'
miRNA:   3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 13978 0.71 0.541835
Target:  5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3'
miRNA:   3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 88776 0.67 0.779503
Target:  5'- -gACGGACCUgCgggugaAGCAcCGCUGCGGc- -3'
miRNA:   3'- caUGCCUGGAgG------UCGU-GCGGCGCCua -5'
14520 5' -60.3 NC_003521.1 + 201598 0.66 0.827584
Target:  5'- -cGCGGGCCaCCGcuguccccgagcccGCGCuGCUGCGGAc -3'
miRNA:   3'- caUGCCUGGaGGU--------------CGUG-CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 73224 0.68 0.715317
Target:  5'- cUGCGGcGCCUCU-GCGCGCCGCu--- -3'
miRNA:   3'- cAUGCC-UGGAGGuCGUGCGGCGccua -5'
14520 5' -60.3 NC_003521.1 + 179482 0.72 0.495331
Target:  5'- -gACGGguACgCUCCGGCAgCGCCGgGGAa -3'
miRNA:   3'- caUGCC--UG-GAGGUCGU-GCGGCgCCUa -5'
14520 5' -60.3 NC_003521.1 + 226468 0.68 0.715317
Target:  5'- --gUGGGCCaCCAGCACcagguacugGUCGCGGGUg -3'
miRNA:   3'- cauGCCUGGaGGUCGUG---------CGGCGCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.