miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14520 5' -60.3 NC_003521.1 + 210592 0.68 0.721921
Target:  5'- -cGCGGACCUgCAGCGCgacgccaacggccgGCCGaucuCGGAg -3'
miRNA:   3'- caUGCCUGGAgGUCGUG--------------CGGC----GCCUa -5'
14520 5' -60.3 NC_003521.1 + 166544 0.68 0.686687
Target:  5'- aUGCGGAUguugCCGGCGCaCUGCGGAUc -3'
miRNA:   3'- cAUGCCUGga--GGUCGUGcGGCGCCUA- -5'
14520 5' -60.3 NC_003521.1 + 155488 0.71 0.523037
Target:  5'- -cGCcGGCCUgCGGCGgGCCGCGGGc -3'
miRNA:   3'- caUGcCUGGAgGUCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 163642 0.74 0.376401
Target:  5'- cGUGCGGGCCUCgGuGCGCgucucgguGCUGCGGAg -3'
miRNA:   3'- -CAUGCCUGGAGgU-CGUG--------CGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 103467 0.67 0.779503
Target:  5'- -cGCGGAUgcgggagggcggCUCCAGCGgGCCcGCGuGAUa -3'
miRNA:   3'- caUGCCUG------------GAGGUCGUgCGG-CGC-CUA- -5'
14520 5' -60.3 NC_003521.1 + 188466 0.67 0.761643
Target:  5'- -gACGcGCCUCCgagcuacgAGCAgGCCGUGGGc -3'
miRNA:   3'- caUGCcUGGAGG--------UCGUgCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 198270 0.69 0.657689
Target:  5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3'
miRNA:   3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 128286 0.75 0.338838
Target:  5'- -cAUGGugCUgaCCAGCuCGCCGCGGAa -3'
miRNA:   3'- caUGCCugGA--GGUCGuGCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 111272 0.67 0.752554
Target:  5'- cGU-CGGGCCcgccgugCCAGCGcCGCCGCGa-- -3'
miRNA:   3'- -CAuGCCUGGa------GGUCGU-GCGGCGCcua -5'
14520 5' -60.3 NC_003521.1 + 83226 0.76 0.272113
Target:  5'- cGUACGG-CCUCCcGCACGCacucgCGCGGAg -3'
miRNA:   3'- -CAUGCCuGGAGGuCGUGCG-----GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 114924 0.69 0.667383
Target:  5'- cGgcCGGGCCUCguGCAUGCugggCGUGGAc -3'
miRNA:   3'- -CauGCCUGGAGguCGUGCG----GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 216549 0.67 0.734095
Target:  5'- -gAUGGACCugccgagggaaUCCAGguCGCCGCcGAUa -3'
miRNA:   3'- caUGCCUGG-----------AGGUCguGCGGCGcCUA- -5'
14520 5' -60.3 NC_003521.1 + 23970 0.69 0.618798
Target:  5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3'
miRNA:   3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 13978 0.71 0.541835
Target:  5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3'
miRNA:   3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 172042 0.73 0.442066
Target:  5'- -cGCaGGAUCUCUAGCGCGCUGaGGAUg -3'
miRNA:   3'- caUG-CCUGGAGGUCGUGCGGCgCCUA- -5'
14520 5' -60.3 NC_003521.1 + 90044 0.74 0.381879
Target:  5'- -gACGG-CCUCCAGCuccgggacgccgacGCGCuCGCGGAg -3'
miRNA:   3'- caUGCCuGGAGGUCG--------------UGCG-GCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 165935 0.66 0.796887
Target:  5'- gGUACuuGACCUCCAGguCGgggugcUCGCGGAa -3'
miRNA:   3'- -CAUGc-CUGGAGGUCguGC------GGCGCCUa -5'
14520 5' -60.3 NC_003521.1 + 184 0.66 0.788258
Target:  5'- --uCGG-CCUCCcuGCACGCcCGCGGc- -3'
miRNA:   3'- cauGCCuGGAGGu-CGUGCG-GCGCCua -5'
14520 5' -60.3 NC_003521.1 + 18659 0.67 0.778621
Target:  5'- -cACGGACCUgCUGGCcacggggGCGCUGCaGGAc -3'
miRNA:   3'- caUGCCUGGA-GGUCG-------UGCGGCG-CCUa -5'
14520 5' -60.3 NC_003521.1 + 91522 0.67 0.76525
Target:  5'- -gGCGGccgcgucgucGCgCUCCAGCACGUacuugugggcgccgaCGCGGAa -3'
miRNA:   3'- caUGCC----------UG-GAGGUCGUGCG---------------GCGCCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.