Results 1 - 20 of 121 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14520 | 5' | -60.3 | NC_003521.1 | + | 196467 | 0.78 | 0.231977 |
Target: 5'- --gUGGGCCgcagccCCAGCGCGUCGCGGAUg -3' miRNA: 3'- cauGCCUGGa-----GGUCGUGCGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 198270 | 0.69 | 0.657689 |
Target: 5'- --cCGGACagCCAGCcggGCGUCGCGGAg -3' miRNA: 3'- cauGCCUGgaGGUCG---UGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 166544 | 0.68 | 0.686687 |
Target: 5'- aUGCGGAUguugCCGGCGCaCUGCGGAUc -3' miRNA: 3'- cAUGCCUGga--GGUCGUGcGGCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 183914 | 0.66 | 0.837866 |
Target: 5'- -gGCGGugCUgCGGCGCuGUCGCGa-- -3' miRNA: 3'- caUGCCugGAgGUCGUG-CGGCGCcua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 90044 | 0.74 | 0.381879 |
Target: 5'- -gACGG-CCUCCAGCuccgggacgccgacGCGCuCGCGGAg -3' miRNA: 3'- caUGCCuGGAGGUCG--------------UGCG-GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 200338 | 0.74 | 0.384244 |
Target: 5'- cUGCGGcGCCgu-GGCGCGCCGCGGAc -3' miRNA: 3'- cAUGCC-UGGaggUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 172042 | 0.73 | 0.442066 |
Target: 5'- -cGCaGGAUCUCUAGCGCGCUGaGGAUg -3' miRNA: 3'- caUG-CCUGGAGGUCGUGCGGCgCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 114719 | 0.72 | 0.46831 |
Target: 5'- -gACGaGAUCgaccgcuggaUCCGGCACGCCGUGGGg -3' miRNA: 3'- caUGC-CUGG----------AGGUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 13978 | 0.71 | 0.541835 |
Target: 5'- -gAUGGGCCUgcCCGGCGCGgCgGCGGGc -3' miRNA: 3'- caUGCCUGGA--GGUCGUGC-GgCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 171637 | 0.69 | 0.647976 |
Target: 5'- cGU-CGGGuaUgUCUAGCGCGCCGCGGc- -3' miRNA: 3'- -CAuGCCU--GgAGGUCGUGCGGCGCCua -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 139245 | 0.7 | 0.589701 |
Target: 5'- uGUACGGGgCUCCucGCGCGgaGCGGGg -3' miRNA: 3'- -CAUGCCUgGAGGu-CGUGCggCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 155488 | 0.71 | 0.523037 |
Target: 5'- -cGCcGGCCUgCGGCGgGCCGCGGGc -3' miRNA: 3'- caUGcCUGGAgGUCGUgCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 83226 | 0.76 | 0.272113 |
Target: 5'- cGUACGG-CCUCCcGCACGCacucgCGCGGAg -3' miRNA: 3'- -CAUGCCuGGAGGuCGUGCG-----GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 23970 | 0.69 | 0.618798 |
Target: 5'- -cACGGGCCUggaaCAGUcgucCGCCGCGGGc -3' miRNA: 3'- caUGCCUGGAg---GUCGu---GCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 128286 | 0.75 | 0.338838 |
Target: 5'- -cAUGGugCUgaCCAGCuCGCCGCGGAa -3' miRNA: 3'- caUGCCugGA--GGUCGuGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 78504 | 0.72 | 0.495331 |
Target: 5'- -gACGGGCCgaCCGGaCACGCgaCGCGGAUu -3' miRNA: 3'- caUGCCUGGa-GGUC-GUGCG--GCGCCUA- -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 95919 | 0.69 | 0.647976 |
Target: 5'- --uCGG-CCaCCGGCAUGCCGUGGGc -3' miRNA: 3'- cauGCCuGGaGGUCGUGCGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 114924 | 0.69 | 0.667383 |
Target: 5'- cGgcCGGGCCUCguGCAUGCugggCGUGGAc -3' miRNA: 3'- -CauGCCUGGAGguCGUGCG----GCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 163642 | 0.74 | 0.376401 |
Target: 5'- cGUGCGGGCCUCgGuGCGCgucucgguGCUGCGGAg -3' miRNA: 3'- -CAUGCCUGGAGgU-CGUG--------CGGCGCCUa -5' |
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14520 | 5' | -60.3 | NC_003521.1 | + | 60274 | 0.73 | 0.433504 |
Target: 5'- -cGCGccACC-CCGGUACGCCGCGGAg -3' miRNA: 3'- caUGCc-UGGaGGUCGUGCGGCGCCUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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