Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14528 | 3' | -55 | NC_003521.1 | + | 167471 | 0.65 | 0.967796 |
Target: 5'- uGAGGGCCgUGCGCGgcgcGUaGUugCACUu -3' miRNA: 3'- gUUCUCGG-ACGUGCa---CA-CGugGUGAu -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 226880 | 0.65 | 0.967796 |
Target: 5'- gCGAGGGCagCUGCGgGg--GCACCACg- -3' miRNA: 3'- -GUUCUCG--GACGUgCacaCGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 148842 | 0.65 | 0.967796 |
Target: 5'- ---cGGCCgagGUGCGUgccGUGCACCGCg- -3' miRNA: 3'- guucUCGGa--CGUGCA---CACGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 167906 | 0.65 | 0.967796 |
Target: 5'- -uAGAGCg-GCAgGUGggGCGCCGCg- -3' miRNA: 3'- guUCUCGgaCGUgCACa-CGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 11990 | 0.65 | 0.967796 |
Target: 5'- aGGGAG-CUGUAUcUGUGUACCGCa- -3' miRNA: 3'- gUUCUCgGACGUGcACACGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 77034 | 0.65 | 0.967796 |
Target: 5'- uGAG-GCCgGCG-GUGgugGCGCCGCUAc -3' miRNA: 3'- gUUCuCGGaCGUgCACa--CGUGGUGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 113480 | 0.65 | 0.967796 |
Target: 5'- gGAGGGCgUGCAgauCGUGgccgaccgGCAgCCGCUGa -3' miRNA: 3'- gUUCUCGgACGU---GCACa-------CGU-GGUGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 119224 | 0.66 | 0.961232 |
Target: 5'- uGAGcgccAGCCaGCugGUGUGC-UCGCUGg -3' miRNA: 3'- gUUC----UCGGaCGugCACACGuGGUGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 73216 | 0.66 | 0.961232 |
Target: 5'- cCGAGcGCCUGCgGCGccucUGcGCGCCGCUc -3' miRNA: 3'- -GUUCuCGGACG-UGC----ACaCGUGGUGAu -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 162877 | 0.66 | 0.957624 |
Target: 5'- gCAGGGGC--GCGCGcagGUGgGCCGCUAc -3' miRNA: 3'- -GUUCUCGgaCGUGCa--CACgUGGUGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 76182 | 0.66 | 0.953794 |
Target: 5'- --cGGGCCUGC--GUGagGCGCCACa- -3' miRNA: 3'- guuCUCGGACGugCACa-CGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 32131 | 0.66 | 0.953794 |
Target: 5'- gCAGGuAGCggGCGCG-GUGCACCAa-- -3' miRNA: 3'- -GUUC-UCGgaCGUGCaCACGUGGUgau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 6690 | 0.66 | 0.953794 |
Target: 5'- -cAGGGCCUGCGCccgcgaGCGCUGCUGg -3' miRNA: 3'- guUCUCGGACGUGcaca--CGUGGUGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 14134 | 0.66 | 0.949736 |
Target: 5'- gAAGGGCUgGCACGUGacguUGCGCCu--- -3' miRNA: 3'- gUUCUCGGaCGUGCAC----ACGUGGugau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 111586 | 0.66 | 0.949736 |
Target: 5'- cCAGGuGCC-GCGCGUGgccagcgGCGCCggACUGc -3' miRNA: 3'- -GUUCuCGGaCGUGCACa------CGUGG--UGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 156128 | 0.66 | 0.949736 |
Target: 5'- gGAGgccGGCCUGgAgGUGUGCACgcaGCUGc -3' miRNA: 3'- gUUC---UCGGACgUgCACACGUGg--UGAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 170934 | 0.66 | 0.949736 |
Target: 5'- cCAAGAucguucucuaugGCCUGgGCGUG-GCGCUGCg- -3' miRNA: 3'- -GUUCU------------CGGACgUGCACaCGUGGUGau -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 196967 | 0.67 | 0.945449 |
Target: 5'- cCGGGAGCCgGC-CGgg-GCGCCugUGa -3' miRNA: 3'- -GUUCUCGGaCGuGCacaCGUGGugAU- -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 183848 | 0.67 | 0.945449 |
Target: 5'- gGAGAGCCUGCACucgcGCaucuACCGCUu -3' miRNA: 3'- gUUCUCGGACGUGcacaCG----UGGUGAu -5' |
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14528 | 3' | -55 | NC_003521.1 | + | 88778 | 0.67 | 0.940928 |
Target: 5'- -cGGA-CCUGCGgGUGaaGCACCGCUGc -3' miRNA: 3'- guUCUcGGACGUgCACa-CGUGGUGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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