Results 21 - 40 of 651 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14534 | 5' | -61.7 | NC_003521.1 | + | 212833 | 0.78 | 0.204407 |
Target: 5'- aGGUGCc-GCucacGCuGCCGCCGUGGCCGUg -3' miRNA: 3'- -CCACGauCGu---CG-CGGUGGCGCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 98466 | 0.78 | 0.204407 |
Target: 5'- aGGagGC-GGCGGCgGCCGCgGCGGCCGUg -3' miRNA: 3'- -CCa-CGaUCGUCG-CGGUGgCGCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 130475 | 0.77 | 0.209187 |
Target: 5'- cGUGCUGGCccAGCuaCACCgcgagcGCGGCCGCg -3' miRNA: 3'- cCACGAUCG--UCGcgGUGG------CGCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 87619 | 0.77 | 0.209187 |
Target: 5'- aGGUGUggcAGCAgGUGCCGCCGCaGGCCucGCa -3' miRNA: 3'- -CCACGa--UCGU-CGCGGUGGCG-CCGG--CG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 139302 | 0.77 | 0.209187 |
Target: 5'- cGGaGCU-GCAGCGCCugCugguCGGCCGCg -3' miRNA: 3'- -CCaCGAuCGUCGCGGugGc---GCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 226341 | 0.77 | 0.21308 |
Target: 5'- uGGUGCgcgcgccccgcgGGUAGCGCCGCgggaGCGGCgGCu -3' miRNA: 3'- -CCACGa-----------UCGUCGCGGUGg---CGCCGgCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 43818 | 0.77 | 0.213571 |
Target: 5'- --cGC-AGCAGCcgggucaGCCGCCGcCGGCCGCg -3' miRNA: 3'- ccaCGaUCGUCG-------CGGUGGC-GCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 73144 | 0.77 | 0.214063 |
Target: 5'- gGGgcaGCggcGGCGGCGCCGCCuCGGCCuGCg -3' miRNA: 3'- -CCa--CGa--UCGUCGCGGUGGcGCCGG-CG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 59428 | 0.77 | 0.214063 |
Target: 5'- --cGCgacAGCGGCGCCGCCGCcGGCaGCg -3' miRNA: 3'- ccaCGa--UCGUCGCGGUGGCG-CCGgCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 181202 | 0.77 | 0.214063 |
Target: 5'- -cUGCgagccGCGGuCGCCGCCGgGGCCGCc -3' miRNA: 3'- ccACGau---CGUC-GCGGUGGCgCCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 100250 | 0.77 | 0.219036 |
Target: 5'- aGGUGCccgacgacgAGCuGuCGCCGCCGCcGCCGCa -3' miRNA: 3'- -CCACGa--------UCGuC-GCGGUGGCGcCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 127067 | 0.77 | 0.219036 |
Target: 5'- cGGUGCcgcGGCAGgGCCACCGacgagaGGCgGCc -3' miRNA: 3'- -CCACGa--UCGUCgCGGUGGCg-----CCGgCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 148903 | 0.77 | 0.219036 |
Target: 5'- --cGCcgAGgAGCGCCGCCGCGGCaucgaGCa -3' miRNA: 3'- ccaCGa-UCgUCGCGGUGGCGCCGg----CG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 95218 | 0.77 | 0.219036 |
Target: 5'- gGGUGCgacuGCAGCagcgaggccacgGCCGCCGCGucguGCCGCc -3' miRNA: 3'- -CCACGau--CGUCG------------CGGUGGCGC----CGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 70750 | 0.77 | 0.224108 |
Target: 5'- --aGCU-GCAGCG-CGCCGCGGCCGa -3' miRNA: 3'- ccaCGAuCGUCGCgGUGGCGCCGGCg -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 222154 | 0.77 | 0.224108 |
Target: 5'- uGGUcCU-GCAGCGCCcCCGUGGCCaGCa -3' miRNA: 3'- -CCAcGAuCGUCGCGGuGGCGCCGG-CG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 90156 | 0.77 | 0.229279 |
Target: 5'- --aGC-AGCGGCGCCGCCGCcggagaGCCGCc -3' miRNA: 3'- ccaCGaUCGUCGCGGUGGCGc-----CGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 167667 | 0.77 | 0.229279 |
Target: 5'- aGGUcGCaggccgaGGCGGCGCCGCCGCcGCUGCc -3' miRNA: 3'- -CCA-CGa------UCGUCGCGGUGGCGcCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 166127 | 0.77 | 0.23455 |
Target: 5'- --cGCUGccGCGGCGCCGCCGUcGCUGCu -3' miRNA: 3'- ccaCGAU--CGUCGCGGUGGCGcCGGCG- -5' |
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14534 | 5' | -61.7 | NC_003521.1 | + | 135219 | 0.76 | 0.239923 |
Target: 5'- -cUGCU-GCAGCGCCugaGCGGCUGCg -3' miRNA: 3'- ccACGAuCGUCGCGGuggCGCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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