miRNA display CGI


Results 1 - 20 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 164433 1.13 0.000808
Target:  5'- uGGUGCUAGCAGCGCCACCGCGGCCGCg -3'
miRNA:   3'- -CCACGAUCGUCGCGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 31613 0.92 0.021763
Target:  5'- gGGUcaGCUGGCAGgGCCACCGCGGCCGa -3'
miRNA:   3'- -CCA--CGAUCGUCgCGGUGGCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 184480 0.89 0.033661
Target:  5'- aGGUGCUGGUGuGCGcCCugCGCGGCCGCg -3'
miRNA:   3'- -CCACGAUCGU-CGC-GGugGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 100692 0.87 0.051888
Target:  5'- -aUGCUGauGCggaGGCGCCGCCGCGGCCGCu -3'
miRNA:   3'- ccACGAU--CG---UCGCGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 103650 0.86 0.060382
Target:  5'- gGGgcaGCUcGGCGGCgGCCGCUGCGGCCGCg -3'
miRNA:   3'- -CCa--CGA-UCGUCG-CGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 137691 0.84 0.077608
Target:  5'- uGGUGCU-GCAGCaCCGCCGCGcGCUGCg -3'
miRNA:   3'- -CCACGAuCGUCGcGGUGGCGC-CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 142335 0.82 0.099237
Target:  5'- gGGUGCgcgaGGCcGCcgccacgGCCGCCGCGGCCGCc -3'
miRNA:   3'- -CCACGa---UCGuCG-------CGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 130127 0.82 0.11528
Target:  5'- -cUGCgucgucGGCGGCGCCGCCGCuGCCGCc -3'
miRNA:   3'- ccACGa-----UCGUCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 203982 0.81 0.118131
Target:  5'- aGGUGCUcuacccggcacAGCAGCGCCGgcCCGUGGCgCGUg -3'
miRNA:   3'- -CCACGA-----------UCGUCGCGGU--GGCGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 123573 0.81 0.127083
Target:  5'- cGGUGgcgggaUGGCGGCggcgccgggaGCCGCCGCGGCCGUc -3'
miRNA:   3'- -CCACg-----AUCGUCG----------CGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 144033 0.8 0.13666
Target:  5'- cGUGCccGUAGCGCCGCCGCuGCUGCc -3'
miRNA:   3'- cCACGauCGUCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 76363 0.8 0.150459
Target:  5'- cGGcgGC-AGCGGCGaCCgugacgGCCGCGGCCGCg -3'
miRNA:   3'- -CCa-CGaUCGUCGC-GG------UGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 101492 0.8 0.154102
Target:  5'- aGGUGCUcgagcAGCGGCgGCCAgaCGCGGCCGa -3'
miRNA:   3'- -CCACGA-----UCGUCG-CGGUg-GCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 149299 0.79 0.165514
Target:  5'- cGUGCUGG-AGCGCgACgaCGCGGCCGCc -3'
miRNA:   3'- cCACGAUCgUCGCGgUG--GCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 148771 0.79 0.165514
Target:  5'- gGGUGCccucGGCGgucGCGCCgaggaGCCGCGGCUGCg -3'
miRNA:   3'- -CCACGa---UCGU---CGCGG-----UGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 53971 0.79 0.169484
Target:  5'- cGUGCU-GCA-CGCCGCCGCugGGCCGCc -3'
miRNA:   3'- cCACGAuCGUcGCGGUGGCG--CCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 177585 0.79 0.177679
Target:  5'- --aGgUGGCGGCGCCGCCGguucCGGCCGUu -3'
miRNA:   3'- ccaCgAUCGUCGCGGUGGC----GCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 123938 0.78 0.190632
Target:  5'- --cGCcGGC-GCGCCGCCGCaGCCGCg -3'
miRNA:   3'- ccaCGaUCGuCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 116767 0.78 0.190632
Target:  5'- uGUGC-AGCgugGGcCGCCGCCGCGGCaCGCu -3'
miRNA:   3'- cCACGaUCG---UC-GCGGUGGCGCCG-GCG- -5'
14534 5' -61.7 NC_003521.1 + 198209 0.78 0.199722
Target:  5'- uGGcgGCga-CGGCGCCGCCgGCGGCCGUg -3'
miRNA:   3'- -CCa-CGaucGUCGCGGUGG-CGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.