miRNA display CGI


Results 1 - 20 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 122111 0.76 0.250977
Target:  5'- cGGcUGC-AGCGGCGUCucGCCGCGGCUGa -3'
miRNA:   3'- -CC-ACGaUCGUCGCGG--UGGCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 43818 0.77 0.213571
Target:  5'- --cGC-AGCAGCcgggucaGCCGCCGcCGGCCGCg -3'
miRNA:   3'- ccaCGaUCGUCG-------CGGUGGC-GCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 59428 0.77 0.214063
Target:  5'- --cGCgacAGCGGCGCCGCCGCcGGCaGCg -3'
miRNA:   3'- ccaCGa--UCGUCGCGGUGGCG-CCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 73144 0.77 0.214063
Target:  5'- gGGgcaGCggcGGCGGCGCCGCCuCGGCCuGCg -3'
miRNA:   3'- -CCa--CGa--UCGUCGCGGUGGcGCCGG-CG- -5'
14534 5' -61.7 NC_003521.1 + 100250 0.77 0.219036
Target:  5'- aGGUGCccgacgacgAGCuGuCGCCGCCGCcGCCGCa -3'
miRNA:   3'- -CCACGa--------UCGuC-GCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 148903 0.77 0.219036
Target:  5'- --cGCcgAGgAGCGCCGCCGCGGCaucgaGCa -3'
miRNA:   3'- ccaCGa-UCgUCGCGGUGGCGCCGg----CG- -5'
14534 5' -61.7 NC_003521.1 + 70750 0.77 0.224108
Target:  5'- --aGCU-GCAGCG-CGCCGCGGCCGa -3'
miRNA:   3'- ccaCGAuCGUCGCgGUGGCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 222154 0.77 0.224108
Target:  5'- uGGUcCU-GCAGCGCCcCCGUGGCCaGCa -3'
miRNA:   3'- -CCAcGAuCGUCGCGGuGGCGCCGG-CG- -5'
14534 5' -61.7 NC_003521.1 + 198169 0.76 0.250414
Target:  5'- cGUGC-AGCAGaCGUacgccuaCACCGCGGCUGCu -3'
miRNA:   3'- cCACGaUCGUC-GCG-------GUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 226341 0.77 0.21308
Target:  5'- uGGUGCgcgcgccccgcgGGUAGCGCCGCgggaGCGGCgGCu -3'
miRNA:   3'- -CCACGa-----------UCGUCGCGGUGg---CGCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 130475 0.77 0.209187
Target:  5'- cGUGCUGGCccAGCuaCACCgcgagcGCGGCCGCg -3'
miRNA:   3'- cCACGAUCG--UCGcgGUGG------CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 87619 0.77 0.209187
Target:  5'- aGGUGUggcAGCAgGUGCCGCCGCaGGCCucGCa -3'
miRNA:   3'- -CCACGa--UCGU-CGCGGUGGCG-CCGG--CG- -5'
14534 5' -61.7 NC_003521.1 + 100692 0.87 0.051888
Target:  5'- -aUGCUGauGCggaGGCGCCGCCGCGGCCGCu -3'
miRNA:   3'- ccACGAU--CG---UCGCGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 137691 0.84 0.077608
Target:  5'- uGGUGCU-GCAGCaCCGCCGCGcGCUGCg -3'
miRNA:   3'- -CCACGAuCGUCGcGGUGGCGC-CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 142335 0.82 0.099237
Target:  5'- gGGUGCgcgaGGCcGCcgccacgGCCGCCGCGGCCGCc -3'
miRNA:   3'- -CCACGa---UCGuCG-------CGGUGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 130127 0.82 0.11528
Target:  5'- -cUGCgucgucGGCGGCGCCGCCGCuGCCGCc -3'
miRNA:   3'- ccACGa-----UCGUCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 101492 0.8 0.154102
Target:  5'- aGGUGCUcgagcAGCGGCgGCCAgaCGCGGCCGa -3'
miRNA:   3'- -CCACGA-----UCGUCG-CGGUg-GCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 148771 0.79 0.165514
Target:  5'- gGGUGCccucGGCGgucGCGCCgaggaGCCGCGGCUGCg -3'
miRNA:   3'- -CCACGa---UCGU---CGCGG-----UGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 149299 0.79 0.165514
Target:  5'- cGUGCUGG-AGCGCgACgaCGCGGCCGCc -3'
miRNA:   3'- cCACGAUCgUCGCGgUG--GCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 116767 0.78 0.190632
Target:  5'- uGUGC-AGCgugGGcCGCCGCCGCGGCaCGCu -3'
miRNA:   3'- cCACGaUCG---UC-GCGGUGGCGCCG-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.