miRNA display CGI


Results 1 - 20 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 361 0.67 0.701317
Target:  5'- --cGgaGGCGGCGCCugcgACCGCuGcCCGCc -3'
miRNA:   3'- ccaCgaUCGUCGCGG----UGGCGcC-GGCG- -5'
14534 5' -61.7 NC_003521.1 + 395 0.71 0.485374
Target:  5'- uGUGCUGGC-GCGCgGCUGUGaCUGCa -3'
miRNA:   3'- cCACGAUCGuCGCGgUGGCGCcGGCG- -5'
14534 5' -61.7 NC_003521.1 + 1102 0.67 0.701317
Target:  5'- cGUGCUGGUGGCcaCCAUCGUccacgaGGCgGCg -3'
miRNA:   3'- cCACGAUCGUCGc-GGUGGCG------CCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 1304 0.67 0.738384
Target:  5'- uGGUuccGCUA-CGGCGCCggcgacguGgCGCGGCUGUa -3'
miRNA:   3'- -CCA---CGAUcGUCGCGG--------UgGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 1440 0.7 0.512387
Target:  5'- uGGgccGCgAGCuGCGCCGCCGgUGGCaGCa -3'
miRNA:   3'- -CCa--CGaUCGuCGCGGUGGC-GCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 2719 0.7 0.539998
Target:  5'- cGUGCgggAGCGcCGUCACCGCcucgcuggcuGGCUGCu -3'
miRNA:   3'- cCACGa--UCGUcGCGGUGGCG----------CCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 3645 0.66 0.78284
Target:  5'- cGUGCca-CGGcCGCCGCCgucugccucgGCGGCCGg -3'
miRNA:   3'- cCACGaucGUC-GCGGUGG----------CGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 4355 0.69 0.60608
Target:  5'- --cGCcGGCGGUucGCuCAUCGCGGcCCGCg -3'
miRNA:   3'- ccaCGaUCGUCG--CG-GUGGCGCC-GGCG- -5'
14534 5' -61.7 NC_003521.1 + 5313 0.73 0.36218
Target:  5'- --cGCgggGGCGGCguGCC-CCGcCGGCCGCg -3'
miRNA:   3'- ccaCGa--UCGUCG--CGGuGGC-GCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 5534 0.74 0.354773
Target:  5'- cGGUGa---CGGCaGCCGgCGCGGCCGCc -3'
miRNA:   3'- -CCACgaucGUCG-CGGUgGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 6088 0.7 0.568095
Target:  5'- cGGUGC-GGCGGCGuuCCGCCaCGGCUa- -3'
miRNA:   3'- -CCACGaUCGUCGC--GGUGGcGCCGGcg -5'
14534 5' -61.7 NC_003521.1 + 6380 0.75 0.299413
Target:  5'- gGGUcGCggAGgGGCGCCgcagcuACCGCGGCgGCg -3'
miRNA:   3'- -CCA-CGa-UCgUCGCGG------UGGCGCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 6683 0.7 0.530734
Target:  5'- cGUGCU-GCAGgGCCugCGC--CCGCg -3'
miRNA:   3'- cCACGAuCGUCgCGGugGCGccGGCG- -5'
14534 5' -61.7 NC_003521.1 + 7647 0.68 0.653892
Target:  5'- cGGUaacGGCGGcCGCCACgGCGG-CGCg -3'
miRNA:   3'- -CCAcgaUCGUC-GCGGUGgCGCCgGCG- -5'
14534 5' -61.7 NC_003521.1 + 8413 0.66 0.747467
Target:  5'- aGGcGCUGGCGuUGCCguGCCGCaGgCGCa -3'
miRNA:   3'- -CCaCGAUCGUcGCGG--UGGCGcCgGCG- -5'
14534 5' -61.7 NC_003521.1 + 8466 0.75 0.292983
Target:  5'- --cGCUucGCGGUGCCGCCGCGacuGCUGCu -3'
miRNA:   3'- ccaCGAu-CGUCGCGGUGGCGC---CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 8903 0.73 0.392869
Target:  5'- uGGUaGCUGGCuacGGCGCgggagaagaGCCGCuGCCGCa -3'
miRNA:   3'- -CCA-CGAUCG---UCGCGg--------UGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 12564 0.69 0.615633
Target:  5'- cGUGCUGGCcaaacCGaCCACCaCGGCgGCa -3'
miRNA:   3'- cCACGAUCGuc---GC-GGUGGcGCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 13870 0.69 0.603217
Target:  5'- -cUGCgGGCGGCGCCGCCauggauuucgccggGgGGCCcgGCg -3'
miRNA:   3'- ccACGaUCGUCGCGGUGG--------------CgCCGG--CG- -5'
14534 5' -61.7 NC_003521.1 + 13933 0.68 0.634767
Target:  5'- --cGCUGGCcgccguGGUGCCcCCGCaGCUGCc -3'
miRNA:   3'- ccaCGAUCG------UCGCGGuGGCGcCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.