miRNA display CGI


Results 1 - 20 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 147877 0.65 0.797327
Target:  5'- uGGUGCUGggauuuugguGUucgaucggaaaaauGGCGCCGUCGCuGCCGUa -3'
miRNA:   3'- -CCACGAU----------CG--------------UCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 206719 0.65 0.797327
Target:  5'- cGUGCgGGCGGCGggcucCUAUCGCGcgauaucgccgacuGCCGCc -3'
miRNA:   3'- cCACGaUCGUCGC-----GGUGGCGC--------------CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 154031 0.65 0.796485
Target:  5'- uGGUGCaugcucuugccgcGGCAGgCGCCcauaaaGCCGUGcagcaGCCGCa -3'
miRNA:   3'- -CCACGa------------UCGUC-GCGG------UGGCGC-----CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 126077 0.66 0.756462
Target:  5'- --aGCUguGGCcGCGCCACCcccacgGCGuGCCGg -3'
miRNA:   3'- ccaCGA--UCGuCGCGGUGG------CGC-CGGCg -5'
14534 5' -61.7 NC_003521.1 + 103432 0.66 0.756462
Target:  5'- cGUGCgugAGCucCGCCAggUCGCGGCgGUu -3'
miRNA:   3'- cCACGa--UCGucGCGGU--GGCGCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 62794 0.66 0.746562
Target:  5'- cGG-GCc--CGGCGUCuuugacgACCGUGGCCGCc -3'
miRNA:   3'- -CCaCGaucGUCGCGG-------UGGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 77457 0.66 0.756462
Target:  5'- uGGUGCccguGaCAcUGCCGCCGCcGCUGCu -3'
miRNA:   3'- -CCACGau--C-GUcGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 128847 0.66 0.756462
Target:  5'- uGGUGCgguugAGCAGgaaCAgCGUGGCCaGCa -3'
miRNA:   3'- -CCACGa----UCGUCgcgGUgGCGCCGG-CG- -5'
14534 5' -61.7 NC_003521.1 + 61412 0.66 0.763588
Target:  5'- -cUGCUcagcgacAGCAuGCGgCACCugagcgaGCGGCUGCa -3'
miRNA:   3'- ccACGA-------UCGU-CGCgGUGG-------CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 123494 0.66 0.747467
Target:  5'- --cGCcGGCGGggugucguCGUCGCCGCuGCCGCc -3'
miRNA:   3'- ccaCGaUCGUC--------GCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 167405 0.66 0.76536
Target:  5'- --cGCUAGUGGgGgCGCUuCGGCUGCu -3'
miRNA:   3'- ccaCGAUCGUCgCgGUGGcGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 191035 0.66 0.756462
Target:  5'- cGG-GC-GGCAGCGUCugC-UGGCCGa -3'
miRNA:   3'- -CCaCGaUCGUCGCGGugGcGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 180905 0.66 0.764475
Target:  5'- --aGgUGGgAGC-CCACCuuguacuGCGGCCGCu -3'
miRNA:   3'- ccaCgAUCgUCGcGGUGG-------CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 192450 0.66 0.746562
Target:  5'- aGGgGCaUGGCGGCGgCGCCgguuuccaggacgGCGGUCGg -3'
miRNA:   3'- -CCaCG-AUCGUCGCgGUGG-------------CGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 112123 0.66 0.756462
Target:  5'- gGGUGCgcaAGCGGUaUCugCGCGaggaGCUGCg -3'
miRNA:   3'- -CCACGa--UCGUCGcGGugGCGC----CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 88242 0.66 0.76536
Target:  5'- --aGCcgaAGUAGCGCUugUGCGGCgccaGCu -3'
miRNA:   3'- ccaCGa--UCGUCGCGGugGCGCCGg---CG- -5'
14534 5' -61.7 NC_003521.1 + 101908 0.66 0.756462
Target:  5'- -aUGUagGGCAG-GCgCACCgaGCGGCCGUg -3'
miRNA:   3'- ccACGa-UCGUCgCG-GUGG--CGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 123556 0.66 0.756462
Target:  5'- cGG-GCagguGCAGCGCCAggcagUCGUGcagcGCCGCg -3'
miRNA:   3'- -CCaCGau--CGUCGCGGU-----GGCGC----CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 140848 0.66 0.756462
Target:  5'- cGUGCUGG-AGCGCU-UCGCGGUCu- -3'
miRNA:   3'- cCACGAUCgUCGCGGuGGCGCCGGcg -5'
14534 5' -61.7 NC_003521.1 + 138020 0.66 0.76536
Target:  5'- aGGUGC--GCGuGCGUCGCUGCcGG-CGCa -3'
miRNA:   3'- -CCACGauCGU-CGCGGUGGCG-CCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.