miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 3' -56.8 NC_003521.1 + 165560 0.92 0.045293
Target:  5'- cAGCCUacGGAUCACACGGCCACUCAGc -3'
miRNA:   3'- -UCGGAguCCUAGUGUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 59081 0.78 0.331961
Target:  5'- cGGCC---GGAUCGCGCGGCCGCUUGGc -3'
miRNA:   3'- -UCGGaguCCUAGUGUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 110288 0.78 0.339309
Target:  5'- aGGCgCUCAGGuggCACACGGUCuGCUCGGg -3'
miRNA:   3'- -UCG-GAGUCCua-GUGUGCCGG-UGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 138886 0.74 0.547619
Target:  5'- cAGCCUggacaCGGGcAUCuaccacCACGGCCGCUCGGu -3'
miRNA:   3'- -UCGGA-----GUCC-UAGu-----GUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 145713 0.74 0.567131
Target:  5'- aGGCCacgcUCAaGcgCGCGCGGCCGCUCAa -3'
miRNA:   3'- -UCGG----AGUcCuaGUGUGCCGGUGAGUc -5'
14536 3' -56.8 NC_003521.1 + 161120 0.74 0.567131
Target:  5'- uAGUCgggaauugCAGGAUCaACGCGGCCGCgggCGGu -3'
miRNA:   3'- -UCGGa-------GUCCUAG-UGUGCCGGUGa--GUC- -5'
14536 3' -56.8 NC_003521.1 + 188197 0.73 0.576955
Target:  5'- gGGCCgacgCAGGAUCACcCGguccuGCCACUCGu -3'
miRNA:   3'- -UCGGa---GUCCUAGUGuGC-----CGGUGAGUc -5'
14536 3' -56.8 NC_003521.1 + 88526 0.72 0.636453
Target:  5'- cAGCCgugCAGGcgCACcgaaACGGCCucCUCGGg -3'
miRNA:   3'- -UCGGa--GUCCuaGUG----UGCCGGu-GAGUC- -5'
14536 3' -56.8 NC_003521.1 + 167163 0.71 0.695816
Target:  5'- cGCCUCGGGcGUCuuggAgGCGGCCGCggCGGa -3'
miRNA:   3'- uCGGAGUCC-UAG----UgUGCCGGUGa-GUC- -5'
14536 3' -56.8 NC_003521.1 + 166102 0.71 0.70558
Target:  5'- gGGCCggCAGGuUCACGCGGgCCuGCUuCAGg -3'
miRNA:   3'- -UCGGa-GUCCuAGUGUGCC-GG-UGA-GUC- -5'
14536 3' -56.8 NC_003521.1 + 109402 0.71 0.70558
Target:  5'- aGGCgCUCAGGGU-GCGCGGCUGCaUCAu -3'
miRNA:   3'- -UCG-GAGUCCUAgUGUGCCGGUG-AGUc -5'
14536 3' -56.8 NC_003521.1 + 114745 0.71 0.715287
Target:  5'- cGCCgUgGGGGUgGCGCGGCCACa--- -3'
miRNA:   3'- uCGG-AgUCCUAgUGUGCCGGUGaguc -5'
14536 3' -56.8 NC_003521.1 + 217082 0.71 0.724925
Target:  5'- uAGCC-CAGGAaCAguCGGCCGCcCAGc -3'
miRNA:   3'- -UCGGaGUCCUaGUguGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 203394 0.69 0.807265
Target:  5'- cGCCUCAGG-UC-C-CGGCCACgccuccCAGg -3'
miRNA:   3'- uCGGAGUCCuAGuGuGCCGGUGa-----GUC- -5'
14536 3' -56.8 NC_003521.1 + 13167 0.69 0.815771
Target:  5'- cGUCUCAGGAccuccCGgACGGCCGCUg-- -3'
miRNA:   3'- uCGGAGUCCUa----GUgUGCCGGUGAguc -5'
14536 3' -56.8 NC_003521.1 + 178674 0.69 0.815771
Target:  5'- cGCUggaaCAccGGGUgGuCGCGGCCGCUCAGg -3'
miRNA:   3'- uCGGa---GU--CCUAgU-GUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 50212 0.69 0.81913
Target:  5'- cGCCcgaagagcgcgaaggUCAGG-UCGCGgGGCCACUCc- -3'
miRNA:   3'- uCGG---------------AGUCCuAGUGUgCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 192944 0.69 0.82412
Target:  5'- cGCCcUGGGA-CACugGGCCAUgaUCAGc -3'
miRNA:   3'- uCGGaGUCCUaGUGugCCGGUG--AGUC- -5'
14536 3' -56.8 NC_003521.1 + 35670 0.69 0.82412
Target:  5'- aAGCCUU-GGAagUC-CACGGCCACcCGGc -3'
miRNA:   3'- -UCGGAGuCCU--AGuGUGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 182410 0.69 0.832303
Target:  5'- cGGCUUCGucaaccgccGcAUCACGCGGCCGCggCAGa -3'
miRNA:   3'- -UCGGAGU---------CcUAGUGUGCCGGUGa-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.