miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 3' -56.8 NC_003521.1 + 172990 0.68 0.863252
Target:  5'- cGCCuUCuGGGUCGCGgGGCuCACUUg- -3'
miRNA:   3'- uCGG-AGuCCUAGUGUgCCG-GUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 195902 0.69 0.839522
Target:  5'- cAGCCUUuuuAGGGcUCACgcugcucGCGGgCACUCGGa -3'
miRNA:   3'- -UCGGAG---UCCU-AGUG-------UGCCgGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 25777 0.68 0.848148
Target:  5'- cAGCC-CAGGGgcucCACGCGGCUGCagcccaccaUCAGc -3'
miRNA:   3'- -UCGGaGUCCUa---GUGUGCCGGUG---------AGUC- -5'
14536 3' -56.8 NC_003521.1 + 113230 0.68 0.848148
Target:  5'- gGGCCUCAcGuGcAUCACGgGGCUGCUCu- -3'
miRNA:   3'- -UCGGAGU-C-C-UAGUGUgCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 145150 0.68 0.855795
Target:  5'- uGCUggagaAGGAgUCGCGCGGCCAgUCGc -3'
miRNA:   3'- uCGGag---UCCU-AGUGUGCCGGUgAGUc -5'
14536 3' -56.8 NC_003521.1 + 119720 0.68 0.855795
Target:  5'- cAGCCUCagcGGGAUgGCccCGGCCcggaagaugaACUCGGg -3'
miRNA:   3'- -UCGGAG---UCCUAgUGu-GCCGG----------UGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 28177 0.68 0.863252
Target:  5'- cGcCCUCuucGGGUCGCAUGGCCAagUCGc -3'
miRNA:   3'- uC-GGAGu--CCUAGUGUGCCGGUg-AGUc -5'
14536 3' -56.8 NC_003521.1 + 118246 0.68 0.863252
Target:  5'- uGCCUCGugucggguGGAUCACGCGGUaGC-CGGc -3'
miRNA:   3'- uCGGAGU--------CCUAGUGUGCCGgUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 151675 0.68 0.863252
Target:  5'- cAGCCgucCAGGGUCuuGCGGUCG-UCAGc -3'
miRNA:   3'- -UCGGa--GUCCUAGugUGCCGGUgAGUC- -5'
14536 3' -56.8 NC_003521.1 + 50212 0.69 0.81913
Target:  5'- cGCCcgaagagcgcgaaggUCAGG-UCGCGgGGCCACUCc- -3'
miRNA:   3'- uCGG---------------AGUCCuAGUGUgCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 178674 0.69 0.815771
Target:  5'- cGCUggaaCAccGGGUgGuCGCGGCCGCUCAGg -3'
miRNA:   3'- uCGGa---GU--CCUAgU-GUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 13167 0.69 0.815771
Target:  5'- cGUCUCAGGAccuccCGgACGGCCGCUg-- -3'
miRNA:   3'- uCGGAGUCCUa----GUgUGCCGGUGAguc -5'
14536 3' -56.8 NC_003521.1 + 59081 0.78 0.331961
Target:  5'- cGGCC---GGAUCGCGCGGCCGCUUGGc -3'
miRNA:   3'- -UCGGaguCCUAGUGUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 145713 0.74 0.567131
Target:  5'- aGGCCacgcUCAaGcgCGCGCGGCCGCUCAa -3'
miRNA:   3'- -UCGG----AGUcCuaGUGUGCCGGUGAGUc -5'
14536 3' -56.8 NC_003521.1 + 188197 0.73 0.576955
Target:  5'- gGGCCgacgCAGGAUCACcCGguccuGCCACUCGu -3'
miRNA:   3'- -UCGGa---GUCCUAGUGuGC-----CGGUGAGUc -5'
14536 3' -56.8 NC_003521.1 + 88526 0.72 0.636453
Target:  5'- cAGCCgugCAGGcgCACcgaaACGGCCucCUCGGg -3'
miRNA:   3'- -UCGGa--GUCCuaGUG----UGCCGGu-GAGUC- -5'
14536 3' -56.8 NC_003521.1 + 166102 0.71 0.70558
Target:  5'- gGGCCggCAGGuUCACGCGGgCCuGCUuCAGg -3'
miRNA:   3'- -UCGGa-GUCCuAGUGUGCC-GG-UGA-GUC- -5'
14536 3' -56.8 NC_003521.1 + 109402 0.71 0.70558
Target:  5'- aGGCgCUCAGGGU-GCGCGGCUGCaUCAu -3'
miRNA:   3'- -UCG-GAGUCCUAgUGUGCCGGUG-AGUc -5'
14536 3' -56.8 NC_003521.1 + 217082 0.71 0.724925
Target:  5'- uAGCC-CAGGAaCAguCGGCCGCcCAGc -3'
miRNA:   3'- -UCGGaGUCCUaGUguGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 203394 0.69 0.807265
Target:  5'- cGCCUCAGG-UC-C-CGGCCACgccuccCAGg -3'
miRNA:   3'- uCGGAGUCCuAGuGuGCCGGUGa-----GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.