miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 3' -56.8 NC_003521.1 + 6427 0.68 0.877568
Target:  5'- cGCCUCGGGAcgcUCAUugACGGUCAUgaCGGc -3'
miRNA:   3'- uCGGAGUCCU---AGUG--UGCCGGUGa-GUC- -5'
14536 3' -56.8 NC_003521.1 + 13167 0.69 0.815771
Target:  5'- cGUCUCAGGAccuccCGgACGGCCGCUg-- -3'
miRNA:   3'- uCGGAGUCCUa----GUgUGCCGGUGAguc -5'
14536 3' -56.8 NC_003521.1 + 17419 0.67 0.891057
Target:  5'- cGCCgcgcCGGGGcgcCACACGGCCcGCgUCGGg -3'
miRNA:   3'- uCGGa---GUCCUa--GUGUGCCGG-UG-AGUC- -5'
14536 3' -56.8 NC_003521.1 + 25777 0.68 0.848148
Target:  5'- cAGCC-CAGGGgcucCACGCGGCUGCagcccaccaUCAGc -3'
miRNA:   3'- -UCGGaGUCCUa---GUGUGCCGGUG---------AGUC- -5'
14536 3' -56.8 NC_003521.1 + 28177 0.68 0.863252
Target:  5'- cGcCCUCuucGGGUCGCAUGGCCAagUCGc -3'
miRNA:   3'- uC-GGAGu--CCUAGUGUGCCGGUg-AGUc -5'
14536 3' -56.8 NC_003521.1 + 29922 0.66 0.93137
Target:  5'- uGGCCgUCaAGGGccUgGCACGGCCAC-CGa -3'
miRNA:   3'- -UCGG-AG-UCCU--AgUGUGCCGGUGaGUc -5'
14536 3' -56.8 NC_003521.1 + 31764 0.66 0.926284
Target:  5'- cGGCacaUCGGGGUCGCGCcagucGCCGCacucgCAGa -3'
miRNA:   3'- -UCGg--AGUCCUAGUGUGc----CGGUGa----GUC- -5'
14536 3' -56.8 NC_003521.1 + 34459 0.67 0.909673
Target:  5'- gGGCCUgGGGGUCGuCGCcgcaGGCCagcaGCUCGc -3'
miRNA:   3'- -UCGGAgUCCUAGU-GUG----CCGG----UGAGUc -5'
14536 3' -56.8 NC_003521.1 + 35670 0.69 0.82412
Target:  5'- aAGCCUU-GGAagUC-CACGGCCACcCGGc -3'
miRNA:   3'- -UCGGAGuCCU--AGuGUGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 50212 0.69 0.81913
Target:  5'- cGCCcgaagagcgcgaaggUCAGG-UCGCGgGGCCACUCc- -3'
miRNA:   3'- uCGG---------------AGUCCuAGUGUgCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 54505 0.66 0.93623
Target:  5'- cGGCCcggcguggacCAGGAUCuGCACGgcGCCGCUgGGg -3'
miRNA:   3'- -UCGGa---------GUCCUAG-UGUGC--CGGUGAgUC- -5'
14536 3' -56.8 NC_003521.1 + 59081 0.78 0.331961
Target:  5'- cGGCC---GGAUCGCGCGGCCGCUUGGc -3'
miRNA:   3'- -UCGGaguCCUAGUGUGCCGGUGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 62867 0.66 0.930871
Target:  5'- cGCCUCAGcAUCccucccgguaccgAC-CGGCCACUCc- -3'
miRNA:   3'- uCGGAGUCcUAG-------------UGuGCCGGUGAGuc -5'
14536 3' -56.8 NC_003521.1 + 68411 0.66 0.920972
Target:  5'- cGCCUCGGG-UCcCGCGGCgACg--- -3'
miRNA:   3'- uCGGAGUCCuAGuGUGCCGgUGaguc -5'
14536 3' -56.8 NC_003521.1 + 72014 0.66 0.93623
Target:  5'- cAGCUUCAGGAUgcgcCGCGUGGCCugcAC-CAGg -3'
miRNA:   3'- -UCGGAGUCCUA----GUGUGCCGG---UGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 83965 0.68 0.877568
Target:  5'- aGGUgCUCGGGGUCggugacccgcgACAUGGCCACgUAGa -3'
miRNA:   3'- -UCG-GAGUCCUAG-----------UGUGCCGGUGaGUC- -5'
14536 3' -56.8 NC_003521.1 + 84426 0.68 0.863252
Target:  5'- cAGCggCAGGGUgGCgaaGCGGCC-CUCGGu -3'
miRNA:   3'- -UCGgaGUCCUAgUG---UGCCGGuGAGUC- -5'
14536 3' -56.8 NC_003521.1 + 88526 0.72 0.636453
Target:  5'- cAGCCgugCAGGcgCACcgaaACGGCCucCUCGGg -3'
miRNA:   3'- -UCGGa--GUCCuaGUG----UGCCGGu-GAGUC- -5'
14536 3' -56.8 NC_003521.1 + 99185 0.68 0.876872
Target:  5'- uGGCUg-AGGGUCACgucggugACGGCCGCggcgCAGu -3'
miRNA:   3'- -UCGGagUCCUAGUG-------UGCCGGUGa---GUC- -5'
14536 3' -56.8 NC_003521.1 + 100442 0.66 0.945276
Target:  5'- cGGCgCUCGGGA--GCAgGGCCGC-CGa -3'
miRNA:   3'- -UCG-GAGUCCUagUGUgCCGGUGaGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.