Results 1 - 20 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14536 | 3' | -56.8 | NC_003521.1 | + | 6427 | 0.68 | 0.877568 |
Target: 5'- cGCCUCGGGAcgcUCAUugACGGUCAUgaCGGc -3' miRNA: 3'- uCGGAGUCCU---AGUG--UGCCGGUGa-GUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 13167 | 0.69 | 0.815771 |
Target: 5'- cGUCUCAGGAccuccCGgACGGCCGCUg-- -3' miRNA: 3'- uCGGAGUCCUa----GUgUGCCGGUGAguc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 17419 | 0.67 | 0.891057 |
Target: 5'- cGCCgcgcCGGGGcgcCACACGGCCcGCgUCGGg -3' miRNA: 3'- uCGGa---GUCCUa--GUGUGCCGG-UG-AGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 25777 | 0.68 | 0.848148 |
Target: 5'- cAGCC-CAGGGgcucCACGCGGCUGCagcccaccaUCAGc -3' miRNA: 3'- -UCGGaGUCCUa---GUGUGCCGGUG---------AGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 28177 | 0.68 | 0.863252 |
Target: 5'- cGcCCUCuucGGGUCGCAUGGCCAagUCGc -3' miRNA: 3'- uC-GGAGu--CCUAGUGUGCCGGUg-AGUc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 29922 | 0.66 | 0.93137 |
Target: 5'- uGGCCgUCaAGGGccUgGCACGGCCAC-CGa -3' miRNA: 3'- -UCGG-AG-UCCU--AgUGUGCCGGUGaGUc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 31764 | 0.66 | 0.926284 |
Target: 5'- cGGCacaUCGGGGUCGCGCcagucGCCGCacucgCAGa -3' miRNA: 3'- -UCGg--AGUCCUAGUGUGc----CGGUGa----GUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 34459 | 0.67 | 0.909673 |
Target: 5'- gGGCCUgGGGGUCGuCGCcgcaGGCCagcaGCUCGc -3' miRNA: 3'- -UCGGAgUCCUAGU-GUG----CCGG----UGAGUc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 35670 | 0.69 | 0.82412 |
Target: 5'- aAGCCUU-GGAagUC-CACGGCCACcCGGc -3' miRNA: 3'- -UCGGAGuCCU--AGuGUGCCGGUGaGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 50212 | 0.69 | 0.81913 |
Target: 5'- cGCCcgaagagcgcgaaggUCAGG-UCGCGgGGCCACUCc- -3' miRNA: 3'- uCGG---------------AGUCCuAGUGUgCCGGUGAGuc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 54505 | 0.66 | 0.93623 |
Target: 5'- cGGCCcggcguggacCAGGAUCuGCACGgcGCCGCUgGGg -3' miRNA: 3'- -UCGGa---------GUCCUAG-UGUGC--CGGUGAgUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 59081 | 0.78 | 0.331961 |
Target: 5'- cGGCC---GGAUCGCGCGGCCGCUUGGc -3' miRNA: 3'- -UCGGaguCCUAGUGUGCCGGUGAGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 62867 | 0.66 | 0.930871 |
Target: 5'- cGCCUCAGcAUCccucccgguaccgAC-CGGCCACUCc- -3' miRNA: 3'- uCGGAGUCcUAG-------------UGuGCCGGUGAGuc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 68411 | 0.66 | 0.920972 |
Target: 5'- cGCCUCGGG-UCcCGCGGCgACg--- -3' miRNA: 3'- uCGGAGUCCuAGuGUGCCGgUGaguc -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 72014 | 0.66 | 0.93623 |
Target: 5'- cAGCUUCAGGAUgcgcCGCGUGGCCugcAC-CAGg -3' miRNA: 3'- -UCGGAGUCCUA----GUGUGCCGG---UGaGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 83965 | 0.68 | 0.877568 |
Target: 5'- aGGUgCUCGGGGUCggugacccgcgACAUGGCCACgUAGa -3' miRNA: 3'- -UCG-GAGUCCUAG-----------UGUGCCGGUGaGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 84426 | 0.68 | 0.863252 |
Target: 5'- cAGCggCAGGGUgGCgaaGCGGCC-CUCGGu -3' miRNA: 3'- -UCGgaGUCCUAgUG---UGCCGGuGAGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 88526 | 0.72 | 0.636453 |
Target: 5'- cAGCCgugCAGGcgCACcgaaACGGCCucCUCGGg -3' miRNA: 3'- -UCGGa--GUCCuaGUG----UGCCGGu-GAGUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 99185 | 0.68 | 0.876872 |
Target: 5'- uGGCUg-AGGGUCACgucggugACGGCCGCggcgCAGu -3' miRNA: 3'- -UCGGagUCCUAGUG-------UGCCGGUGa---GUC- -5' |
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14536 | 3' | -56.8 | NC_003521.1 | + | 100442 | 0.66 | 0.945276 |
Target: 5'- cGGCgCUCGGGA--GCAgGGCCGC-CGa -3' miRNA: 3'- -UCG-GAGUCCUagUGUgCCGGUGaGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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