miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14536 5' -53.6 NC_003521.1 + 32373 0.66 0.990358
Target:  5'- gGCUUuuGGUGGCGcGUGgccAGGUCCucGGGCg -3'
miRNA:   3'- -CGGAu-UCACUGC-CAC---UCUAGG--UCCGa -5'
14536 5' -53.6 NC_003521.1 + 132258 0.66 0.990358
Target:  5'- cGCUgaGAGUGACagaGGUGguauacggccaGGGUCCGGGUg -3'
miRNA:   3'- -CGGa-UUCACUG---CCAC-----------UCUAGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 9682 0.66 0.990358
Target:  5'- cGCCUccAAGUGAUGGUaaAGAUaaCCAGGa- -3'
miRNA:   3'- -CGGA--UUCACUGCCAc-UCUA--GGUCCga -5'
14536 5' -53.6 NC_003521.1 + 105825 0.66 0.990358
Target:  5'- aGCCagauGGUGggGCGGaugaUGAGGUCCGauuGGCUa -3'
miRNA:   3'- -CGGau--UCAC--UGCC----ACUCUAGGU---CCGA- -5'
14536 5' -53.6 NC_003521.1 + 69236 0.66 0.989064
Target:  5'- cUCUGAGaGACGGgGAGA-CCAGGgUg -3'
miRNA:   3'- cGGAUUCaCUGCCaCUCUaGGUCCgA- -5'
14536 5' -53.6 NC_003521.1 + 101473 0.66 0.989064
Target:  5'- cGCCUcguAGUGGCGcGUGAGGUgCucgagcagcGGCg -3'
miRNA:   3'- -CGGAu--UCACUGC-CACUCUAgGu--------CCGa -5'
14536 5' -53.6 NC_003521.1 + 22992 0.66 0.987638
Target:  5'- cGCCUGGuUGACGGUGAuagcgGcAUCCgaggAGGCc -3'
miRNA:   3'- -CGGAUUcACUGCCACU-----C-UAGG----UCCGa -5'
14536 5' -53.6 NC_003521.1 + 141286 0.66 0.987638
Target:  5'- cGCCUccGcGACaGGUGcAGGUgCGGGCg -3'
miRNA:   3'- -CGGAuuCaCUG-CCAC-UCUAgGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 148499 0.66 0.987638
Target:  5'- ---cGAGgcgGGCGGaUGGGAUCCGGGaCg -3'
miRNA:   3'- cggaUUCa--CUGCC-ACUCUAGGUCC-Ga -5'
14536 5' -53.6 NC_003521.1 + 218185 0.66 0.987638
Target:  5'- gGUCUAagacguacauGGUG-CGGUGGGugucCCGGGCa -3'
miRNA:   3'- -CGGAU----------UCACuGCCACUCua--GGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 120060 0.66 0.986073
Target:  5'- gGCCccAGUGGCaGGccGGcAUCCAGGCg -3'
miRNA:   3'- -CGGauUCACUG-CCacUC-UAGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 99377 0.66 0.98436
Target:  5'- uGCUgguGGUcgucggcgaaGAUGGUGAGGUCCAGcaGCg -3'
miRNA:   3'- -CGGau-UCA----------CUGCCACUCUAGGUC--CGa -5'
14536 5' -53.6 NC_003521.1 + 27449 0.66 0.98436
Target:  5'- gGCCgaauucGGCcGUGAGcgCCAGGCUg -3'
miRNA:   3'- -CGGauuca-CUGcCACUCuaGGUCCGA- -5'
14536 5' -53.6 NC_003521.1 + 31649 0.66 0.982491
Target:  5'- cGCCcAGGUGuCGGuUGuucUCCAGGCg -3'
miRNA:   3'- -CGGaUUCACuGCC-ACucuAGGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 155661 0.66 0.982491
Target:  5'- -gCUGGGUGGCGGcgGAGGUCUGGaCg -3'
miRNA:   3'- cgGAUUCACUGCCa-CUCUAGGUCcGa -5'
14536 5' -53.6 NC_003521.1 + 59207 0.66 0.982491
Target:  5'- uCCUGAGUcGCGuG-GAGAUCgGGGCc -3'
miRNA:   3'- cGGAUUCAcUGC-CaCUCUAGgUCCGa -5'
14536 5' -53.6 NC_003521.1 + 172800 0.67 0.98046
Target:  5'- cGCCgcccGUGGCGGUGAGGcUCAcGCa -3'
miRNA:   3'- -CGGauu-CACUGCCACUCUaGGUcCGa -5'
14536 5' -53.6 NC_003521.1 + 150537 0.67 0.978257
Target:  5'- aGCCgugGGGUccGGCGGUGGuGGUgCGGGUg -3'
miRNA:   3'- -CGGa--UUCA--CUGCCACU-CUAgGUCCGa -5'
14536 5' -53.6 NC_003521.1 + 19933 0.67 0.970552
Target:  5'- cCCgaggAGGUGGgcgagaucgUGGUGAGGUggCCGGGCUg -3'
miRNA:   3'- cGGa---UUCACU---------GCCACUCUA--GGUCCGA- -5'
14536 5' -53.6 NC_003521.1 + 233543 0.68 0.961064
Target:  5'- uGCCUGucuAGUcGAC-GUGGGAUCcCAGGUg -3'
miRNA:   3'- -CGGAU---UCA-CUGcCACUCUAG-GUCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.