miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 174226 1.11 0.004241
Target:  5'- uCUGGGGUUGGCGAGCGAUCAUGACGCu -3'
miRNA:   3'- -GACCCCAACCGCUCGCUAGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39888 0.81 0.336967
Target:  5'- uUGGGGUgGGCGuGCGGUCGUcccggcgGGCGCg -3'
miRNA:   3'- gACCCCAaCCGCuCGCUAGUA-------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 240115 0.81 0.336967
Target:  5'- uUGGGGUgGGCGuGCGGUCGUcccggcgGGCGCg -3'
miRNA:   3'- gACCCCAaCCGCuCGCUAGUA-------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 15517 0.77 0.488647
Target:  5'- gCUcGGGUUGGCG-GCGG-CAUGugGCg -3'
miRNA:   3'- -GAcCCCAACCGCuCGCUaGUACugCG- -5'
14545 5' -55.1 NC_003521.1 + 41633 0.77 0.507372
Target:  5'- uCUGGGGcgUGGCGcccGUGGUCAUGAUGa -3'
miRNA:   3'- -GACCCCa-ACCGCu--CGCUAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 126314 0.77 0.516849
Target:  5'- aUGGGGUUGGUGA-UGAUCAccGACGUg -3'
miRNA:   3'- gACCCCAACCGCUcGCUAGUa-CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 122676 0.74 0.674261
Target:  5'- gUGGGG-UGGCGucgccGGUGAUCAUGgGCGUc -3'
miRNA:   3'- gACCCCaACCGC-----UCGCUAGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 32725 0.74 0.693963
Target:  5'- -gGGGGUUGGCGAcGCcacCAgcgGGCGCg -3'
miRNA:   3'- gaCCCCAACCGCU-CGcuaGUa--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 141360 0.73 0.732713
Target:  5'- --cGGGUgcGGCG-GCGGUCGgUGACGCg -3'
miRNA:   3'- gacCCCAa-CCGCuCGCUAGU-ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 123225 0.72 0.760939
Target:  5'- -cGGGGgcGGCGguaGGUGGUCGUaGCGCc -3'
miRNA:   3'- gaCCCCaaCCGC---UCGCUAGUAcUGCG- -5'
14545 5' -55.1 NC_003521.1 + 195352 0.72 0.77923
Target:  5'- gUGGuGGUgGGcCGGGUGAagGUGACGCc -3'
miRNA:   3'- gACC-CCAaCC-GCUCGCUagUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 5821 0.72 0.788193
Target:  5'- -aGGGGUggugccgggucccGGCGAccggggcccuuuuauGCGAUCcgGGCGCg -3'
miRNA:   3'- gaCCCCAa------------CCGCU---------------CGCUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 40358 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 240585 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 36 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 57125 0.71 0.805712
Target:  5'- -aGGGGgaauccgcGGUGGGUGGagGUGACGCu -3'
miRNA:   3'- gaCCCCaa------CCGCUCGCUagUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 77712 0.71 0.822635
Target:  5'- -aGGaGGc-GGCG-GUGGUCGUGGCGCu -3'
miRNA:   3'- gaCC-CCaaCCGCuCGCUAGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 13979 0.71 0.822635
Target:  5'- aUGGGccugcccggcgcGgcGGCGGGCGAggacccCAUGGCGCu -3'
miRNA:   3'- gACCC------------CaaCCGCUCGCUa-----GUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 206434 0.71 0.830855
Target:  5'- -cGGGGcgUGGUGuAGCGAU--UGACGUg -3'
miRNA:   3'- gaCCCCa-ACCGC-UCGCUAguACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 19450 0.7 0.85446
Target:  5'- -gGGGGgaGGCGcGGCGGgacCAUGuCGCu -3'
miRNA:   3'- gaCCCCaaCCGC-UCGCUa--GUACuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.