miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 36 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 5821 0.72 0.788193
Target:  5'- -aGGGGUggugccgggucccGGCGAccggggcccuuuuauGCGAUCcgGGCGCg -3'
miRNA:   3'- gaCCCCAa------------CCGCU---------------CGCUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 7576 0.66 0.975035
Target:  5'- gUGGGuacggUGaCGAGUGAcguagCAUGACGCa -3'
miRNA:   3'- gACCCca---ACcGCUCGCUa----GUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 7730 0.68 0.920051
Target:  5'- gUGGGGagGGCGGcGCGAgCGgcgGAgGCg -3'
miRNA:   3'- gACCCCaaCCGCU-CGCUaGUa--CUgCG- -5'
14545 5' -55.1 NC_003521.1 + 13979 0.71 0.822635
Target:  5'- aUGGGccugcccggcgcGgcGGCGGGCGAggacccCAUGGCGCu -3'
miRNA:   3'- gACCC------------CaaCCGCUCGCUa-----GUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 15517 0.77 0.488647
Target:  5'- gCUcGGGUUGGCG-GCGG-CAUGugGCg -3'
miRNA:   3'- -GAcCCCAACCGCuCGCUaGUACugCG- -5'
14545 5' -55.1 NC_003521.1 + 18687 0.7 0.861215
Target:  5'- uCUGGGGUuucgccaUGGcCGGcGCGAUCcggcUGugGCu -3'
miRNA:   3'- -GACCCCA-------ACC-GCU-CGCUAGu---ACugCG- -5'
14545 5' -55.1 NC_003521.1 + 18730 0.69 0.914471
Target:  5'- gCUGGc---GGCG-GCGAUCGUGGCGg -3'
miRNA:   3'- -GACCccaaCCGCuCGCUAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 19450 0.7 0.85446
Target:  5'- -gGGGGgaGGCGcGGCGGgacCAUGuCGCu -3'
miRNA:   3'- gaCCCCaaCCGC-UCGCUa--GUACuGCG- -5'
14545 5' -55.1 NC_003521.1 + 19967 0.68 0.935433
Target:  5'- --cGGGcUGGCG-GUGAUCGUGACc- -3'
miRNA:   3'- gacCCCaACCGCuCGCUAGUACUGcg -5'
14545 5' -55.1 NC_003521.1 + 24231 0.68 0.935433
Target:  5'- -aGcGGGUUGggcaGCGGGCGGUCG-GGCGg -3'
miRNA:   3'- gaC-CCCAAC----CGCUCGCUAGUaCUGCg -5'
14545 5' -55.1 NC_003521.1 + 26609 0.7 0.876353
Target:  5'- uUGGGGcaaucgGGCacGCGGUCGUGuACGCc -3'
miRNA:   3'- gACCCCaa----CCGcuCGCUAGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 27343 0.68 0.944561
Target:  5'- cCUGuGGaUGGCGugcaccGGCGccGUCAUGACGUg -3'
miRNA:   3'- -GACcCCaACCGC------UCGC--UAGUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 31002 0.66 0.972449
Target:  5'- aUGGGGcgacgacGGCGccGGCGAg---GACGCg -3'
miRNA:   3'- gACCCCaa-----CCGC--UCGCUaguaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 32725 0.74 0.693963
Target:  5'- -gGGGGUUGGCGAcGCcacCAgcgGGCGCg -3'
miRNA:   3'- gaCCCCAACCGCU-CGcuaGUa--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 34372 0.68 0.940109
Target:  5'- cCUGGGcGUUGcGCaccAGCaGGUgGUGGCGCu -3'
miRNA:   3'- -GACCC-CAAC-CGc--UCG-CUAgUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 37327 0.69 0.896391
Target:  5'- uCUGGG--UGG-GGGCGGUCGcggagGACGCa -3'
miRNA:   3'- -GACCCcaACCgCUCGCUAGUa----CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39106 0.69 0.914471
Target:  5'- --aGGGUUGGCGcAGUcGUCcgGGCGUc -3'
miRNA:   3'- gacCCCAACCGC-UCGcUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39523 0.67 0.963543
Target:  5'- -aGGGGUcGcGCG-GCGAgagC-UGGCGCa -3'
miRNA:   3'- gaCCCCAaC-CGCuCGCUa--GuACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 39888 0.81 0.336967
Target:  5'- uUGGGGUgGGCGuGCGGUCGUcccggcgGGCGCg -3'
miRNA:   3'- gACCCCAaCCGCuCGCUAGUA-------CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.