miRNA display CGI


Results 1 - 20 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 5' -55.1 NC_003521.1 + 131044 0.68 0.944561
Target:  5'- cCUGGGcGgcGGCG-GCGggCcucugGACGCg -3'
miRNA:   3'- -GACCC-CaaCCGCuCGCuaGua---CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 26609 0.7 0.876353
Target:  5'- uUGGGGcaaucgGGCacGCGGUCGUGuACGCc -3'
miRNA:   3'- gACCCCaa----CCGcuCGCUAGUAC-UGCG- -5'
14545 5' -55.1 NC_003521.1 + 209558 0.7 0.876353
Target:  5'- -cGGGGUggcggcgacggUGGCGGG-GGUCcgggGGCGCa -3'
miRNA:   3'- gaCCCCA-----------ACCGCUCgCUAGua--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 47563 0.69 0.90264
Target:  5'- -cGGGGaagacGGCGAGCGggCcacgGugGCg -3'
miRNA:   3'- gaCCCCaa---CCGCUCGCuaGua--CugCG- -5'
14545 5' -55.1 NC_003521.1 + 18730 0.69 0.914471
Target:  5'- gCUGGc---GGCG-GCGAUCGUGGCGg -3'
miRNA:   3'- -GACCccaaCCGCuCGCUAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 239334 0.69 0.914471
Target:  5'- --aGGGUUGGCGcAGUcGUCcgGGCGUc -3'
miRNA:   3'- gacCCCAACCGC-UCGcUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 221880 0.68 0.925404
Target:  5'- gCUGGGGUagGGCGuGUGGggCGgauugccGGCGCg -3'
miRNA:   3'- -GACCCCAa-CCGCuCGCUa-GUa------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 24231 0.68 0.935433
Target:  5'- -aGcGGGUUGggcaGCGGGCGGUCG-GGCGg -3'
miRNA:   3'- gaC-CCCAAC----CGCUCGCUAGUaCUGCg -5'
14545 5' -55.1 NC_003521.1 + 34372 0.68 0.940109
Target:  5'- cCUGGGcGUUGcGCaccAGCaGGUgGUGGCGCu -3'
miRNA:   3'- -GACCC-CAAC-CGc--UCG-CUAgUACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 150467 0.7 0.861956
Target:  5'- uCUGGGGc-GGCGAGCGccUgGUGGgGCc -3'
miRNA:   3'- -GACCCCaaCCGCUCGCu-AgUACUgCG- -5'
14545 5' -55.1 NC_003521.1 + 18687 0.7 0.861215
Target:  5'- uCUGGGGUuucgccaUGGcCGGcGCGAUCcggcUGugGCu -3'
miRNA:   3'- -GACCCCA-------ACC-GCU-CGCUAGu---ACugCG- -5'
14545 5' -55.1 NC_003521.1 + 206434 0.71 0.830855
Target:  5'- -cGGGGcgUGGUGuAGCGAU--UGACGUg -3'
miRNA:   3'- gaCCCCa-ACCGC-UCGCUAguACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 240115 0.81 0.336967
Target:  5'- uUGGGGUgGGCGuGCGGUCGUcccggcgGGCGCg -3'
miRNA:   3'- gACCCCAaCCGCuCGCUAGUA-------CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 41633 0.77 0.507372
Target:  5'- uCUGGGGcgUGGCGcccGUGGUCAUGAUGa -3'
miRNA:   3'- -GACCCCa-ACCGCu--CGCUAGUACUGCg -5'
14545 5' -55.1 NC_003521.1 + 126314 0.77 0.516849
Target:  5'- aUGGGGUUGGUGA-UGAUCAccGACGUg -3'
miRNA:   3'- gACCCCAACCGCUcGCUAGUa-CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 32725 0.74 0.693963
Target:  5'- -gGGGGUUGGCGAcGCcacCAgcgGGCGCg -3'
miRNA:   3'- gaCCCCAACCGCU-CGcuaGUa--CUGCG- -5'
14545 5' -55.1 NC_003521.1 + 141360 0.73 0.732713
Target:  5'- --cGGGUgcGGCG-GCGGUCGgUGACGCg -3'
miRNA:   3'- gacCCCAa-CCGCuCGCUAGU-ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 5821 0.72 0.788193
Target:  5'- -aGGGGUggugccgggucccGGCGAccggggcccuuuuauGCGAUCcgGGCGCg -3'
miRNA:   3'- gaCCCCAa------------CCGCU---------------CGCUAGuaCUGCG- -5'
14545 5' -55.1 NC_003521.1 + 36 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5'
14545 5' -55.1 NC_003521.1 + 240585 0.71 0.805712
Target:  5'- -gGGGGUguuuuUGGCGGGgGggCAcuaaauUGGCGCa -3'
miRNA:   3'- gaCCCCA-----ACCGCUCgCuaGU------ACUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.