Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14547 | 5' | -53 | NC_003521.1 | + | 121813 | 0.68 | 0.977892 |
Target: 5'- cGGcCGUGGUGG--GGU-AGUGGUgCACg -3' miRNA: 3'- -CC-GCACCACUugCCAuUUACCGgGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 128320 | 0.68 | 0.977892 |
Target: 5'- -cCGUGGUGuagccGCGGUccucgggcAGGUacaGGCCCACg -3' miRNA: 3'- ccGCACCACu----UGCCA--------UUUA---CCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 32140 | 0.68 | 0.977892 |
Target: 5'- gGGCGcGGUGcaccaAGCGGcgGAagGcGCCCGCg -3' miRNA: 3'- -CCGCaCCAC-----UUGCCa-UUuaC-CGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 206615 | 0.68 | 0.978806 |
Target: 5'- gGGCGccgucuacgccgcccUGGUGGGCcacgauaagcuGGUcAAGuUGGCCCGCg -3' miRNA: 3'- -CCGC---------------ACCACUUG-----------CCA-UUU-ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 164616 | 0.67 | 0.980124 |
Target: 5'- gGGCGUGcc-GGCGGgcuucUGGCCCAUc -3' miRNA: 3'- -CCGCACcacUUGCCauuu-ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 190580 | 0.67 | 0.980124 |
Target: 5'- cGGCGUGaucgaGGGCGagGAGUGGcCCCGCg -3' miRNA: 3'- -CCGCACca---CUUGCcaUUUACC-GGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 237394 | 0.67 | 0.980124 |
Target: 5'- cGGCGUcGGcauGGCGGgggucUGAGUGGCCC-Ca -3' miRNA: 3'- -CCGCA-CCac-UUGCC-----AUUUACCGGGuG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 18329 | 0.67 | 0.980337 |
Target: 5'- cGGCGUGGUGcuguuggaccaguuCGGc--GUGGUCUACu -3' miRNA: 3'- -CCGCACCACuu------------GCCauuUACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 368 | 0.67 | 0.981985 |
Target: 5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3' miRNA: 3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 40690 | 0.67 | 0.981985 |
Target: 5'- cGGCGUGcuGUGGAacgaaGGUGAGugugugcUGGCgCGCg -3' miRNA: 3'- -CCGCAC--CACUUg----CCAUUU-------ACCGgGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 177923 | 0.67 | 0.982183 |
Target: 5'- gGGCGUcgucGGgagGGAUGGgGAGUGGCCgGu -3' miRNA: 3'- -CCGCA----CCa--CUUGCCaUUUACCGGgUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 23581 | 0.67 | 0.982183 |
Target: 5'- --gGUGGUGGgcGCGGgggugcUGGCCUGCa -3' miRNA: 3'- ccgCACCACU--UGCCauuu--ACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 213749 | 0.67 | 0.982183 |
Target: 5'- aGGcCGUGGUG-GCGGccacguagaAGAUGGCCaGCg -3' miRNA: 3'- -CC-GCACCACuUGCCa--------UUUACCGGgUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 176925 | 0.67 | 0.982183 |
Target: 5'- gGGCGggGGUcgugGGGCGGUcagccAAGUGGgCCAUu -3' miRNA: 3'- -CCGCa-CCA----CUUGCCA-----UUUACCgGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 31020 | 0.67 | 0.982961 |
Target: 5'- cGGCGaggacgcguucguggUGGUGGGgGGUGGGaGGaCCACg -3' miRNA: 3'- -CCGC---------------ACCACUUgCCAUUUaCCgGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 224434 | 0.67 | 0.984078 |
Target: 5'- uGCGUGGUGGGCGagc---GGUCCAg -3' miRNA: 3'- cCGCACCACUUGCcauuuaCCGGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 117898 | 0.67 | 0.985816 |
Target: 5'- cGGUGcUGGUGAGCGGUAAucAUaGCaaCGCa -3' miRNA: 3'- -CCGC-ACCACUUGCCAUU--UAcCGg-GUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 32193 | 0.67 | 0.985816 |
Target: 5'- uGCG-GGUcGGGCauGGUGggGAUGGCUCGCa -3' miRNA: 3'- cCGCaCCA-CUUG--CCAU--UUACCGGGUG- -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 86614 | 0.67 | 0.985816 |
Target: 5'- -uCGUGGUG-GCGGUAGAgcaggaaGCCCAg -3' miRNA: 3'- ccGCACCACuUGCCAUUUac-----CGGGUg -5' |
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14547 | 5' | -53 | NC_003521.1 | + | 238468 | 0.67 | 0.985816 |
Target: 5'- cGGCG-GGcgGGGCGG-AGAcgcGGCCCAg -3' miRNA: 3'- -CCGCaCCa-CUUGCCaUUUa--CCGGGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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