miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 5' -53.8 NC_003521.1 + 170885 0.67 0.95838
Target:  5'- ---gGugGUCAGGCGUCCgGCGUCGc- -3'
miRNA:   3'- aaggUugCAGUUCGCGGG-UGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 8402 0.67 0.96197
Target:  5'- cUCCGACacgCAGGCGCUgGCGUUg-- -3'
miRNA:   3'- aAGGUUGca-GUUCGCGGgUGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 184113 0.66 0.971438
Target:  5'- -cUCGACGUCGAcGCGaCCaGCGUCAUc -3'
miRNA:   3'- aaGGUUGCAGUU-CGC-GGgUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 135491 0.66 0.976724
Target:  5'- cUCUAACGUCAcGuCGCCCACa----- -3'
miRNA:   3'- aAGGUUGCAGUuC-GCGGGUGcaguaa -5'
14560 5' -53.8 NC_003521.1 + 34367 0.67 0.96197
Target:  5'- -aCCGAUGgggCAAuccccCGCCCACGUCAa- -3'
miRNA:   3'- aaGGUUGCa--GUUc----GCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 207259 0.67 0.96197
Target:  5'- -aCCGGCGcuUCucGUGCCUGCGUCAg- -3'
miRNA:   3'- aaGGUUGC--AGuuCGCGGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 85827 0.66 0.974179
Target:  5'- cUUCCAgggcuucggucuGCGUCGGGgaGCCCACG-CAg- -3'
miRNA:   3'- -AAGGU------------UGCAGUUCg-CGGGUGCaGUaa -5'
14560 5' -53.8 NC_003521.1 + 135987 0.68 0.941723
Target:  5'- -cCCAGCGugUCGGGgGgCCGCGUCAc- -3'
miRNA:   3'- aaGGUUGC--AGUUCgCgGGUGCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 205743 0.67 0.96197
Target:  5'- aUCCGGCauGUCGAGCGCCCGgaggaagaccugUGUgGUg -3'
miRNA:   3'- aAGGUUG--CAGUUCGCGGGU------------GCAgUAa -5'
14560 5' -53.8 NC_003521.1 + 23069 0.67 0.96197
Target:  5'- cUCCAcccGCGUCuguGGUGUCUGCGUCcgUg -3'
miRNA:   3'- aAGGU---UGCAGu--UCGCGGGUGCAGuaA- -5'
14560 5' -53.8 NC_003521.1 + 130483 0.68 0.946239
Target:  5'- -cCCAGCuacaccgCGAGCGCggCCGCGUCAUg -3'
miRNA:   3'- aaGGUUGca-----GUUCGCG--GGUGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 170778 0.71 0.820541
Target:  5'- cUCgAACGUCuuGGCGCCCcACGUCc-- -3'
miRNA:   3'- aAGgUUGCAGu-UCGCGGG-UGCAGuaa -5'
14560 5' -53.8 NC_003521.1 + 224678 0.67 0.96534
Target:  5'- cUUCAGCGUCuuggcguGGCGCCCGgG-CGUg -3'
miRNA:   3'- aAGGUUGCAGu------UCGCGGGUgCaGUAa -5'
14560 5' -53.8 NC_003521.1 + 149275 0.66 0.97908
Target:  5'- gUUCC-GCGUC-GGCGCCCACa----- -3'
miRNA:   3'- -AAGGuUGCAGuUCGCGGGUGcaguaa -5'
14560 5' -53.8 NC_003521.1 + 32249 0.69 0.903376
Target:  5'- cUCgAGCGUCAGGC-CCCggAUGUCAUa -3'
miRNA:   3'- aAGgUUGCAGUUCGcGGG--UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 191999 0.66 0.97908
Target:  5'- -gUCAGCGUCGAGCaGCCguuCAuCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGUUCG-CGG---GU-GCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 109373 0.66 0.981254
Target:  5'- gUCCAGCGgCAGGCaGgCCAgGUCGc- -3'
miRNA:   3'- aAGGUUGCaGUUCG-CgGGUgCAGUaa -5'
14560 5' -53.8 NC_003521.1 + 166595 0.66 0.981254
Target:  5'- gUCCAcCGUCAcGGCGCCgACGg---- -3'
miRNA:   3'- aAGGUuGCAGU-UCGCGGgUGCaguaa -5'
14560 5' -53.8 NC_003521.1 + 142433 0.67 0.954564
Target:  5'- -aCCAGCGUCGgcaccAGCGUCUucaggcacGCGUCGUc -3'
miRNA:   3'- aaGGUUGCAGU-----UCGCGGG--------UGCAGUAa -5'
14560 5' -53.8 NC_003521.1 + 142078 0.68 0.936968
Target:  5'- --aCGACGUCAAcuGCGCCUuCGUCGa- -3'
miRNA:   3'- aagGUUGCAGUU--CGCGGGuGCAGUaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.