miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14589 3' -61.8 NC_003521.1 + 152380 0.66 0.8182
Target:  5'- cGC-CGaGGCGGacgacgucUCCCUGGAGACGc -3'
miRNA:   3'- -CGaGCgCCGCCac------AGGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 129198 0.66 0.8182
Target:  5'- uUUCGcCGGCGGUucgaccucGUCgCCGcGGGGCGa -3'
miRNA:   3'- cGAGC-GCCGCCA--------CAGgGGC-CUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 181031 0.66 0.8182
Target:  5'- cGC-CGUGuCGGUGUCCUugCGGaAGGCGg -3'
miRNA:   3'- -CGaGCGCcGCCACAGGG--GCC-UCUGCa -5'
14589 3' -61.8 NC_003521.1 + 155094 0.66 0.813396
Target:  5'- aGUUCGCGGCGcugcaggagcagggcGUGgaggacuucUCCCUGGAGAa-- -3'
miRNA:   3'- -CGAGCGCCGC---------------CAC---------AGGGGCCUCUgca -5'
14589 3' -61.8 NC_003521.1 + 183129 0.66 0.810165
Target:  5'- cGgUUGCGGCGGUcgcaUCCCCGuGcAGACc- -3'
miRNA:   3'- -CgAGCGCCGCCAc---AGGGGC-C-UCUGca -5'
14589 3' -61.8 NC_003521.1 + 124257 0.66 0.810165
Target:  5'- cGCcgCGCGGCaugcuuGGUGUCUgCGGGcGCGa -3'
miRNA:   3'- -CGa-GCGCCG------CCACAGGgGCCUcUGCa -5'
14589 3' -61.8 NC_003521.1 + 164944 0.66 0.801992
Target:  5'- cCUC-CGGCGGcucgcGUCgCCGGAGAgGg -3'
miRNA:   3'- cGAGcGCCGCCa----CAGgGGCCUCUgCa -5'
14589 3' -61.8 NC_003521.1 + 91878 0.66 0.801992
Target:  5'- gGCg-GCGGCGGUGcgaCCaCGGAcgGACGg -3'
miRNA:   3'- -CGagCGCCGCCACag-GG-GCCU--CUGCa -5'
14589 3' -61.8 NC_003521.1 + 151603 0.66 0.793688
Target:  5'- cGCUgGagguCGGcCGGUGUCCCCGGuuaGCa- -3'
miRNA:   3'- -CGAgC----GCC-GCCACAGGGGCCuc-UGca -5'
14589 3' -61.8 NC_003521.1 + 167680 0.66 0.785259
Target:  5'- uGCUCGCGGUugcGGUGacgacgCUCguggaGGAGGCGg -3'
miRNA:   3'- -CGAGCGCCG---CCACa-----GGGg----CCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 33453 0.66 0.780145
Target:  5'- gGCUCGCGcuguucuCGGUGUCggccggccgcgccgaCCCGaGGGACGc -3'
miRNA:   3'- -CGAGCGCc------GCCACAG---------------GGGC-CUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 87973 0.66 0.776713
Target:  5'- cCUCGCGGCgcgaggacucGGUGaaUCUGGGGGCGc -3'
miRNA:   3'- cGAGCGCCG----------CCACagGGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 165043 0.66 0.776713
Target:  5'- uGC-CGCGGCGucugCaCCUGGAGGCGg -3'
miRNA:   3'- -CGaGCGCCGCcacaG-GGGCCUCUGCa -5'
14589 3' -61.8 NC_003521.1 + 113574 0.66 0.768057
Target:  5'- aGgaCGCGGUGGggcugGgCCUCGGGGGCa- -3'
miRNA:   3'- -CgaGCGCCGCCa----CaGGGGCCUCUGca -5'
14589 3' -61.8 NC_003521.1 + 125843 0.66 0.768057
Target:  5'- gGCUCGCGGUGGUcGUacagcgCCuuGGuGGCc- -3'
miRNA:   3'- -CGAGCGCCGCCA-CA------GGggCCuCUGca -5'
14589 3' -61.8 NC_003521.1 + 115917 0.66 0.768057
Target:  5'- aGCUCGCGGUagaGGUGaggCCaguaCGGuugGGGCGUc -3'
miRNA:   3'- -CGAGCGCCG---CCACa--GGg---GCC---UCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 136874 0.66 0.768057
Target:  5'- aCUCGCGGCGGguggcgccggUGUUCgCGGucgacaacGACGUg -3'
miRNA:   3'- cGAGCGCCGCC----------ACAGGgGCCu-------CUGCA- -5'
14589 3' -61.8 NC_003521.1 + 37552 0.67 0.759297
Target:  5'- gGgUCGCGGCGGaaucUCCUCGuAGAUGUg -3'
miRNA:   3'- -CgAGCGCCGCCac--AGGGGCcUCUGCA- -5'
14589 3' -61.8 NC_003521.1 + 120543 0.67 0.759297
Target:  5'- cCUCgGCGGcCGGcgGUCCCgGGGGAgCGc -3'
miRNA:   3'- cGAG-CGCC-GCCa-CAGGGgCCUCU-GCa -5'
14589 3' -61.8 NC_003521.1 + 84831 0.67 0.758416
Target:  5'- aGCUCGCgcagcgccuccucGGUGGUGUagggGGAGACGUa -3'
miRNA:   3'- -CGAGCG-------------CCGCCACAggggCCUCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.