miRNA display CGI


Results 21 - 40 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 197573 0.79 0.445466
Target:  5'- aGGAUGGCGAUGAggcggauGGAGCgCGCccaauguGCGGCg -3'
miRNA:   3'- -CCUACCGCUGCU-------UCUCG-GUGu------CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 204740 0.78 0.452617
Target:  5'- aGGGUGGUGAUGGAGGcgccGCCGCcgcccuguugugucGGCGGCg -3'
miRNA:   3'- -CCUACCGCUGCUUCU----CGGUG--------------UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 103103 0.78 0.473519
Target:  5'- cGGAccacgUGGCaGGCGAAGAGCUggcGCAGCGcGCg -3'
miRNA:   3'- -CCU-----ACCG-CUGCUUCUCGG---UGUCGU-CG- -5'
14590 5' -54.6 NC_003521.1 + 163201 0.78 0.482758
Target:  5'- uGGUGGCGGCGGc-AGCgGCAGUAGCu -3'
miRNA:   3'- cCUACCGCUGCUucUCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 86204 0.78 0.482758
Target:  5'- cGGUGGaGGCGAAGGGCgGCGGCAcGCc -3'
miRNA:   3'- cCUACCgCUGCUUCUCGgUGUCGU-CG- -5'
14590 5' -54.6 NC_003521.1 + 141968 0.78 0.492082
Target:  5'- ---gGGCGACGAgcgucaGGAGCUGCAGCGGg -3'
miRNA:   3'- ccuaCCGCUGCU------UCUCGGUGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 7617 0.78 0.493019
Target:  5'- cGGUGGCGGCGGAcugucgggaacgaccGAcgguaacggcggccGCCACGGCGGCg -3'
miRNA:   3'- cCUACCGCUGCUU---------------CU--------------CGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 82798 0.78 0.495835
Target:  5'- aGGUGGaCGACGAAGaAGCCGacgagaggagggcacCGGCGGCa -3'
miRNA:   3'- cCUACC-GCUGCUUC-UCGGU---------------GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 74572 0.78 0.501488
Target:  5'- aGGgcGGCGACGGAGcGGCgGC-GCGGCg -3'
miRNA:   3'- -CCuaCCGCUGCUUC-UCGgUGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 27974 0.77 0.520531
Target:  5'- ---aGGCGGCGcucacGGCCACGGCGGCa -3'
miRNA:   3'- ccuaCCGCUGCuuc--UCGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 213658 0.77 0.520531
Target:  5'- aGGGUGGgGACGAAGA-CC--AGCAGCa -3'
miRNA:   3'- -CCUACCgCUGCUUCUcGGugUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 98412 0.77 0.520531
Target:  5'- uGGUGGUGACGuu-GGCCAgGGCGGCc -3'
miRNA:   3'- cCUACCGCUGCuucUCGGUgUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 113856 0.77 0.538879
Target:  5'- cGGccGGCGACGAcggcgcgGGuuCCGCGGCGGCa -3'
miRNA:   3'- -CCuaCCGCUGCU-------UCucGGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 131046 0.77 0.538879
Target:  5'- uGGgcGGCGGCGgcGGGCCucuggacGCGGUGGCg -3'
miRNA:   3'- -CCuaCCGCUGCuuCUCGG-------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 70364 0.77 0.539851
Target:  5'- ---cGGCGGgGuAGAGCCGCAgGCGGCg -3'
miRNA:   3'- ccuaCCGCUgCuUCUCGGUGU-CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 212227 0.77 0.549602
Target:  5'- aGGAUGGUGGCGGu--G-CGCAGCAGCc -3'
miRNA:   3'- -CCUACCGCUGCUucuCgGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 186789 0.76 0.559407
Target:  5'- uGGUGGCGGCGGcgGGGGCaagaagCACGGCGGUu -3'
miRNA:   3'- cCUACCGCUGCU--UCUCG------GUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 126310 0.76 0.559407
Target:  5'- -cGUGGCGGCGguGGG-CACGGCGGCc -3'
miRNA:   3'- ccUACCGCUGCuuCUCgGUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 215793 0.76 0.559407
Target:  5'- uGAcgGGCaGCGAGGAGCCggaggaaaaggACGGCAGCg -3'
miRNA:   3'- cCUa-CCGcUGCUUCUCGG-----------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 47565 0.76 0.56926
Target:  5'- gGGAaGaCGGCGAGcGGGCCACGGUGGCg -3'
miRNA:   3'- -CCUaCcGCUGCUU-CUCGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.