miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 5' -55.5 NC_003521.1 + 213832 1.11 0.004091
Target:  5'- cGGUGUAGUCGCAGCAGUUCGGCCCAGu -3'
miRNA:   3'- -CCACAUCAGCGUCGUCAAGCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 140017 0.74 0.652519
Target:  5'- --gGUAGUCGCGGUAG--CGGCCgCAGa -3'
miRNA:   3'- ccaCAUCAGCGUCGUCaaGCCGG-GUC- -5'
14593 5' -55.5 NC_003521.1 + 74906 0.73 0.701904
Target:  5'- ----cGGUgGCGGCGGUggagUCGGCCCGGc -3'
miRNA:   3'- ccacaUCAgCGUCGUCA----AGCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 179411 0.72 0.740458
Target:  5'- aGGUGccgcaugcuGUCGCugAGCAGUuugUCGGCCCGu -3'
miRNA:   3'- -CCACau-------CAGCG--UCGUCA---AGCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 152136 0.72 0.768462
Target:  5'- ---cUGGUCccguGCAGCAGUUCGGCgCGGu -3'
miRNA:   3'- ccacAUCAG----CGUCGUCAAGCCGgGUC- -5'
14593 5' -55.5 NC_003521.1 + 110907 0.71 0.777578
Target:  5'- aGGUGUucgCGCAGCAGgcgcgCGGCCg-- -3'
miRNA:   3'- -CCACAucaGCGUCGUCaa---GCCGGguc -5'
14593 5' -55.5 NC_003521.1 + 128323 0.71 0.795431
Target:  5'- uGGUGUAGcCGCgguccucgGGCAGguacaGGCCCAc -3'
miRNA:   3'- -CCACAUCaGCG--------UCGUCaag--CCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 123234 0.7 0.821144
Target:  5'- cGGUagGUGGUCGUAGCGc--CGcGCCCAGu -3'
miRNA:   3'- -CCA--CAUCAGCGUCGUcaaGC-CGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 69441 0.7 0.821144
Target:  5'- cGGUGgAGUCGCAGguGcgcgaGGCgCAGg -3'
miRNA:   3'- -CCACaUCAGCGUCguCaag--CCGgGUC- -5'
14593 5' -55.5 NC_003521.1 + 96981 0.7 0.853117
Target:  5'- aGGcUGUAGUCGCAG-AGggCGGCgCGc -3'
miRNA:   3'- -CC-ACAUCAGCGUCgUCaaGCCGgGUc -5'
14593 5' -55.5 NC_003521.1 + 161504 0.7 0.860652
Target:  5'- uGGUG-GGUCGC-GUGGUggGGCCCAu -3'
miRNA:   3'- -CCACaUCAGCGuCGUCAagCCGGGUc -5'
14593 5' -55.5 NC_003521.1 + 150563 0.69 0.867992
Target:  5'- cGG-GUGGUgGCGGCGGcggCGGCgCGGc -3'
miRNA:   3'- -CCaCAUCAgCGUCGUCaa-GCCGgGUC- -5'
14593 5' -55.5 NC_003521.1 + 127368 0.69 0.886791
Target:  5'- --cGUGGUgCGCGGCAGgugcgugaugaagggCGGCCaCAGg -3'
miRNA:   3'- ccaCAUCA-GCGUCGUCaa-------------GCCGG-GUC- -5'
14593 5' -55.5 NC_003521.1 + 84593 0.69 0.901584
Target:  5'- cGGUGUGGUCGacCAGCucGGcgUCGGUgacggCCAGg -3'
miRNA:   3'- -CCACAUCAGC--GUCG--UCa-AGCCG-----GGUC- -5'
14593 5' -55.5 NC_003521.1 + 163201 0.68 0.9135
Target:  5'- uGGUGgcGgcggcaGCGGCAGUagcuccggCGGCCUGGg -3'
miRNA:   3'- -CCACauCag----CGUCGUCAa-------GCCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 130933 0.68 0.9135
Target:  5'- cGGUcGaGGUCGCAcGCAGUUacuggUGGCCCc- -3'
miRNA:   3'- -CCA-CaUCAGCGU-CGUCAA-----GCCGGGuc -5'
14593 5' -55.5 NC_003521.1 + 153425 0.68 0.919122
Target:  5'- cGGcGUGGUCaGCAGCAGccggUCGcGCUCGu -3'
miRNA:   3'- -CCaCAUCAG-CGUCGUCa---AGC-CGGGUc -5'
14593 5' -55.5 NC_003521.1 + 184955 0.68 0.919122
Target:  5'- -aUGUAcuUCGCGGCGGUgCGGgCCAGc -3'
miRNA:   3'- ccACAUc-AGCGUCGUCAaGCCgGGUC- -5'
14593 5' -55.5 NC_003521.1 + 167779 0.68 0.924517
Target:  5'- uGGcGUGGUCGUcGaAGUUgaGGCCCAGg -3'
miRNA:   3'- -CCaCAUCAGCGuCgUCAAg-CCGGGUC- -5'
14593 5' -55.5 NC_003521.1 + 124672 0.68 0.929686
Target:  5'- aGGUGgcGUCGCGGUAGgugaUGGUCUu- -3'
miRNA:   3'- -CCACauCAGCGUCGUCaa--GCCGGGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.