Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14593 | 5' | -55.5 | NC_003521.1 | + | 107309 | 0.66 | 0.96301 |
Target: 5'- cGUGaGGUUGCgagaucgcuGGCAGUagGGCUCGGa -3' miRNA: 3'- cCACaUCAGCG---------UCGUCAagCCGGGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 186860 | 0.67 | 0.934629 |
Target: 5'- cGGcGgcGU-GCAGCAcGgcucgUCGGCCCAGc -3' miRNA: 3'- -CCaCauCAgCGUCGU-Ca----AGCCGGGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 17505 | 0.67 | 0.939346 |
Target: 5'- ----cGGUCaCGGCGGUUccCGGCCCGGc -3' miRNA: 3'- ccacaUCAGcGUCGUCAA--GCCGGGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 103449 | 0.67 | 0.939346 |
Target: 5'- ----aGGUCGCGGCGGUUgCGcGCCaCGGc -3' miRNA: 3'- ccacaUCAGCGUCGUCAA-GC-CGG-GUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 201555 | 0.67 | 0.939346 |
Target: 5'- --cGUGG-CGCGGCuGUaUCGGUCCAa -3' miRNA: 3'- ccaCAUCaGCGUCGuCA-AGCCGGGUc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 239374 | 0.67 | 0.948107 |
Target: 5'- cGUGUgcugccaccggcGG-CGCAGCucg-CGGCCCAGu -3' miRNA: 3'- cCACA------------UCaGCGUCGucaaGCCGGGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 178685 | 0.67 | 0.948107 |
Target: 5'- cGG-GUGGUCGCGGCcGcUCaGGUaCCAGg -3' miRNA: 3'- -CCaCAUCAGCGUCGuCaAG-CCG-GGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 30563 | 0.67 | 0.952155 |
Target: 5'- gGGUGUAGcccUCGgGGUAGggCaGGUCCAa -3' miRNA: 3'- -CCACAUC---AGCgUCGUCaaG-CCGGGUc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 103218 | 0.66 | 0.96301 |
Target: 5'- uGGaUGaGGUCGcCGGcCAGgcggCGGCCCAa -3' miRNA: 3'- -CC-ACaUCAGC-GUC-GUCaa--GCCGGGUc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 34947 | 0.67 | 0.934629 |
Target: 5'- --cGUAGUCGCGGCgcacgcagAGgUCGGCCa-- -3' miRNA: 3'- ccaCAUCAGCGUCG--------UCaAGCCGGguc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 124672 | 0.68 | 0.929686 |
Target: 5'- aGGUGgcGUCGCGGUAGgugaUGGUCUu- -3' miRNA: 3'- -CCACauCAGCGUCGUCaa--GCCGGGuc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 153425 | 0.68 | 0.919122 |
Target: 5'- cGGcGUGGUCaGCAGCAGccggUCGcGCUCGu -3' miRNA: 3'- -CCaCAUCAG-CGUCGUCa---AGC-CGGGUc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 140017 | 0.74 | 0.652519 |
Target: 5'- --gGUAGUCGCGGUAG--CGGCCgCAGa -3' miRNA: 3'- ccaCAUCAGCGUCGUCaaGCCGG-GUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 152136 | 0.72 | 0.768462 |
Target: 5'- ---cUGGUCccguGCAGCAGUUCGGCgCGGu -3' miRNA: 3'- ccacAUCAG----CGUCGUCAAGCCGgGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 128323 | 0.71 | 0.795431 |
Target: 5'- uGGUGUAGcCGCgguccucgGGCAGguacaGGCCCAc -3' miRNA: 3'- -CCACAUCaGCG--------UCGUCaag--CCGGGUc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 69441 | 0.7 | 0.821144 |
Target: 5'- cGGUGgAGUCGCAGguGcgcgaGGCgCAGg -3' miRNA: 3'- -CCACaUCAGCGUCguCaag--CCGgGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 150563 | 0.69 | 0.867992 |
Target: 5'- cGG-GUGGUgGCGGCGGcggCGGCgCGGc -3' miRNA: 3'- -CCaCAUCAgCGUCGUCaa-GCCGgGUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 127368 | 0.69 | 0.886791 |
Target: 5'- --cGUGGUgCGCGGCAGgugcgugaugaagggCGGCCaCAGg -3' miRNA: 3'- ccaCAUCA-GCGUCGUCaa-------------GCCGG-GUC- -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 130933 | 0.68 | 0.9135 |
Target: 5'- cGGUcGaGGUCGCAcGCAGUUacuggUGGCCCc- -3' miRNA: 3'- -CCA-CaUCAGCGU-CGUCAA-----GCCGGGuc -5' |
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14593 | 5' | -55.5 | NC_003521.1 | + | 163201 | 0.68 | 0.9135 |
Target: 5'- uGGUGgcGgcggcaGCGGCAGUagcuccggCGGCCUGGg -3' miRNA: 3'- -CCACauCag----CGUCGUCAa-------GCCGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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